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[182902_at]

Description F36A4.4 /REP_DB=WormBase Gene ID /WP=CE07180 /TR=Q20093 /GB=AAA96161.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 19      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 2.3
(-2.7)
A 		9.4
(3)
A 		1.9
(-3)
A 		6.8
(0.9)
A 		8
B 12.3
(-2.1)
A 		15.7
(-1.6)
A 		5.9
(-3)
A 		48.4
(3)
A 		43
C 2.5
(-3)
A 		4.7
(0.9)
A 		3.9
(-0.5)
A 		5.9
(3)
A 		3
avr 5.7
(-2.3) 		9.9
(-0.8) 		3.9
(-3) 		20.4
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 185
1 2 3 4 5 6 range
A 5
(-2.9)
A 		2.2
(-3)
A 		7.3
(-2.8)
A 		5.4
(-2.9)
A 		105.1
(0.5)
P 		180.2
(3)
P 		178
B 5.3
(-2.9)
A 		3.7
(-3)
A 		4.3
(-3)
A 		34
(-1.7)
A 		107.3
(1.4)
P 		145.8
(3)
P 		142
C 2
(-3)
A 		5.4
(-2.9)
A 		36.5
(-1.9)
A 		9.6
(-2.8)
A 		111.3
(0.5)
P 		186.9
(3)
P 		185
avr 4.1
(-3) 		3.8
(-3) 		16
(-2.6) 		16.3
(-2.6) 		107.9
(0.7) 		171
(3) 		167
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 0.8
(-1.8)
A 		2
(3)
A 		0.5
(-3)
A 		1
(-1)
A 		2
B 3.9
(-1.3)
A 		3.9
(-1.3)
A 		1.4
(-3)
A 		10.3
(3)
A 		9
C 0.8
(-3)
A 		1.4
(3)
A 		1.4
(3)
A 		1
(-1)
A 		1
avr 1.8
(-1.6) 		2.4
(-0.4) 		1.1
(-3) 		4.1
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 0.9
(-3)
A 		0.8
(-3)
A 		1.6
(-2.9)
A 		1.4
(-2.9)
A 		31.7
(1.3)
P 		43.9
(3)
P 		43
B 1.8
(-2.9)
A 		1.2
(-3)
A 		1.1
(-3)
A 		9
(-2.1)
A 		43.6
(1.8)
P 		54.4
(3)
P 		53
C 0.7
(-3)
A 		1.6
(-2.9)
A 		9.3
(-2.2)
A 		1.9
(-2.9)
A 		36
(0.4)
P 		62.6
(3)
P 		62
avr 1.1
(-3) 		1.2
(-3) 		4
(-2.7) 		4.1
(-2.7) 		37.1
(1.1) 		53.6
(3) 		53
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182902_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10424
Sequence Type Exemplar sequence
Representative Public ID F36A4.4 NCBI
Target Description F36A4.4 /REP_DB=WormBase Gene ID /WP=CE07180 /TR=Q20093 /GB=AAA96161.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068125(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068125 NCBI Caenorhabditis elegans F36A4.4 (F36A4.4) mRNA, complete cds. 11/11 None
GENEFINDER00000033285 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4267624:4270179:1 11/11 None
F36A4.4 ENSEMBL cdna:known chromosome:CEL140:IV:4267624:4268192:1 gene:F36A4.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000033266 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4267629-4268198(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F36A4.4
Entrez Gene 185341 Entrez gene
SwissProt Q20093 EMBL-EBI
WormBase CE07180 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA96161 Hypothetical protein F36A4.4 [Caenorhabditis elegans] ref|NP_500526.1| F36A4.4 [Caenorhabditis elegans] 1.0E-80
blast AAA96161 Hypothetical protein F36A4.4 [Caenorhabditis elegans] ref|NP_500526.1| F36A4.4 [Caenorhabditis elegans] 1.0E-74
blast AAA96162 Hypothetical protein F36A4.3 [Caenorhabditis elegans] ref|NP_500527.1| F36A4.3 [Caenorhabditis elegans] 3.0E-67
blast AAA96163 Hypothetical protein F36A4.2 [Caenorhabditis elegans] ref|NP_500528.1| F36A4.2 [Caenorhabditis elegans] 1.0E-36
blast AAA96163 Hypothetical protein F36A4.2 [Caenorhabditis elegans] ref|NP_500528.1| F36A4.2 [Caenorhabditis elegans] 4.0E-34
blast AAA96162 Hypothetical protein F36A4.3 [Caenorhabditis elegans] ref|NP_500527.1| F36A4.3 [Caenorhabditis elegans] 5.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR008588 EMBL-EBI Caenorhabditis elegans protein of unknown function DUF870 6.4E-79
Pfam IPR008588 EMBL-EBI Caenorhabditis elegans protein of unknown function DUF870 2.7E-73
Pfam IPR008588 EMBL-EBI Caenorhabditis elegans protein of unknown function DUF870 3.0E-81
Sequence
Target Sequence 
>C. ELEGANS:182902_AT
gcatcttccaacattttgcctggtcatcctatgctctctgaccagtggaattcatatccg
cttccaggctgaaatcgactgtgatattcctggcgcatactggtgtggagaactcaatgt
attggagaaagatgtaatagttcacgatttgctgaaacaagacaaattttgcacatcgga
acgtacaaagacggttaagtacactatcgacgctgaggacgactttcctacagataactt
cgagatcttctacaaattcaatcataattgttctgcaaacggaaaaacgtattgtgtgaa
acctagagatcataaagaagttgatttatttagacctaaaaccgtatacttcaacatcga
agctcgcccaaatgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATCTTCCAACATTTTGCCTGGTC 526 307 15 Antisense
CAACATTTTGCCTGGTCATCCTATG 264 187 23 Antisense
ATCCTATGCTCTCTGACCAGTGGAA 619 39 40 Antisense
GACCAGTGGAATTCATATCCGCTTC 696 383 54 Antisense
ATCCGCTTCCAGGCTGAAATCGACT 31 39 70 Antisense
GACAAATTTTGCACATCGGAACGTA 494 365 175 Antisense
GACGGTTAAGTACACTATCGACGCT 406 375 204 Antisense
CTATCGACGCTGAGGACGACTTTCC 385 221 218 Antisense
GGACGACTTTCCTACAGATAACTTC 128 525 231 Antisense
GACCTAAAACCGTATACTTCAACAT 585 379 347 Antisense
TCAACATCGAAGCTCGCCCAAATGC 654 627 365 Antisense
Sequence Source Affymetrix Proprietary Database