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[182901_at]

Description F20A1.8 /REP_DB=WormBase Gene ID /WP=CE07098 /TR=Q19613 /GB=AAA96129.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 6
(0.7)
A 		3.9
(-3)
A 		7.3
(3)
A 		5.1
(-0.9)
A 		3
B 8.1
(-0)
A 		2.9
(-3)
A 		2.9
(-3)
A 		13.3
(3)
A 		10
C 4.5
(-1.5)
A 		1.7
(-3)
A 		1.7
(-3)
A 		12.7
(3)
A 		11
avr 6.2
(-0.3) 		2.8
(-3) 		4
(-2.1) 		10.4
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 9.1
(-1.8)
A 		3.3
(-3)
A 		5.8
(-2.5)
A 		31.4
(3)
A 		3.9
(-2.9)
A 		4
(-2.9)
A 		28
B 6.7
(3)
A 		3.5
(-0.9)
A 		3.1
(-1.4)
A 		5.6
(1.7)
A 		2.8
(-1.8)
A 		1.8
(-3)
A 		5
C 35.5
(3)
A 		4.9
(-2.4)
A 		4.6
(-2.5)
A 		1.6
(-3)
A 		4.1
(-2.6)
A 		10
(-1.5)
A 		34
avr 17.1
(3) 		3.9
(-2.9) 		4.5
(-2.6) 		12.9
(1.1) 		3.6
(-3) 		5.3
(-2.2) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 2.2
(3)
A 		0.9
(-2.2)
A 		1.9
(1.8)
A 		0.7
(-3)
A 		2
B 2.6
(2.4)
A 		0.7
(-3)
A 		0.7
(-3)
A 		2.8
(3)
A 		2
C 1.5
(0.8)
A 		0.5
(-3)
A 		0.6
(-2.6)
A 		2.1
(3)
A 		2
avr 2.1
(3) 		0.7
(-3) 		1.1
(-1.3) 		1.9
(2.1) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1.7
(-2.4)
A 		1.2
(-2.8)
A 		1.3
(-2.7)
A 		8
(3)
A 		1.2
(-2.8)
A 		1
(-3)
A 		7
B 2.3
(3)
A 		1.2
(-1.1)
A 		0.7
(-3)
A 		1.5
(0)
A 		1.1
(-1.5)
A 		0.7
(-3)
A 		2
C 13.2
(3)
A 		1.5
(-2.4)
A 		1.2
(-2.6)
A 		0.3
(-3)
A 		1.3
(-2.5)
A 		3.3
(-1.6)
A 		13
avr 5.7
(3) 		1.3
(-2.7) 		1.1
(-3) 		3.3
(-0.1) 		1.2
(-2.9) 		1.7
(-2.2) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182901_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11807
Sequence Type Exemplar sequence
Representative Public ID F20A1.8 NCBI
Target Description F20A1.8 /REP_DB=WormBase Gene ID /WP=CE07098 /TR=Q19613 /GB=AAA96129.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072384(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072384 NCBI Caenorhabditis elegans F20A1.8 (F20A1.8) mRNA, complete cds. 11/11 None
GENEFINDER00000026809 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7049720:7050197:-1 11/11 None
F20A1.8 ENSEMBL cdna:known chromosome:CEL140:V:7049720:7050197:-1 gene:F20A1.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000026803 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7049720-7050198(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F20A1.8
Entrez Gene 184706 Entrez gene
SwissProt Q19613 EMBL-EBI
WormBase CE07098 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504785 F20A1.8 [Caenorhabditis elegans] gb|AAA96129.1| Hypothetical protein F20A1.8 [Caenorhabditis elegans] 1.0E-53
Sequence
Target Sequence 
>C. ELEGANS:182901_AT
tttccagtcgacagatacaaaaatgaaaggatggaacacgttagagggaagcgctactac
attataaccgagcacgccgagcaagtcaaaaaagccgccgcggaatacaaggattttaag
gaaaaacaagacgagaaggaagctccaaagatcaggacaaaacgtgattggttcgcaact
ctgactccagagcaggtgcaagaacgctatactttgttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCCAGTCGACAGATACAAAAATG 568 667 85 Antisense
GGAACACGTTAGAGGGAAGCGCTAC 434 525 117 Antisense
GAAGCGCTACTACATTATAACCGAG 539 341 132 Antisense
ACATTATAACCGAGCACGCCGAGCA 595 97 143 Antisense
GCAAGTCAAAAAAGCCGCCGCGGAA 282 321 165 Antisense
AAGCCGCCGCGGAATACAAGGATTT 572 147 176 Antisense
AGGAAGCTCCAAAGATCAGGACAAA 378 55 221 Antisense
GGACAAAACGTGATTGGTTCGCAAC 24 527 239 Antisense
TGATTGGTTCGCAACTCTGACTCCA 628 563 249 Antisense
TCTGACTCCAGAGCAGGTGCAAGAA 384 607 264 Antisense
GGTGCAAGAACGCTATACTTTGTTG 291 495 279 Antisense
Sequence Source Affymetrix Proprietary Database