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[182900_at]

Description K07B1.5 /REP_DB=WormBase Gene ID /WP=CE27392 /TR=O01882 /GB=AAK71374.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 63      6grp_high1_10_10 > 37      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 75      6grp_total > 45      4grp_total > 13      6grp_highest_sub > Cu      6grp_cgc > 45      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 893
1 2 3 4 range
A 1066.3
(-0.2)
P 		707.2
(-2.6)
P 		643.9
(-3)
P 		1536.9
(3)
P 		893
B 1150.5
(0)
P 		1085.1
(-0.5)
P 		761.4
(-3)
P 		1533.5
(3)
P 		772
C 1317.5
(3)
P 		942.2
(-2)
P 		863
(-3)
P 		1309.7
(2.9)
P 		455
avr 1178.1
(0.6) 		911.5
(-1.7) 		756.1
(-3) 		1460
(3) 		704

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 552
1 2 3 4 5 6 range
A 894.3
(-0.4)
P 		841.1
(-1.1)
P 		1148.8
(3)
P 		795.2
(-1.8)
P 		703.7
(-3)
P 		781.4
(-2)
P 		445
B 1086.1
(3)
P 		959.1
(1.2)
P 		1061.7
(2.6)
P 		674.2
(-3)
P 		804.4
(-1.1)
P 		939.6
(0.9)
P 		412
C 961.7
(1.8)
P 		906.3
(1)
P 		769.1
(-0.8)
P 		597.1
(-3)
P 		709.6
(-1.5)
P 		1055.8
(3)
P 		459
avr 980.7
(2.8) 		902.2
(1.2) 		993.2
(3) 		688.8
(-3) 		739.2
(-2) 		925.6
(1.7) 		304
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 283
1 2 3 4 range
A 388.2
(3)
P 		153.5
(-3)
P 		168.3
(-2.6)
P 		225
(-1.2)
P 		235
B 366.9
(3)
P 		268
(-0.1)
P 		176.4
(-3)
P 		326.8
(1.7)
P 		191
C 436.1
(3)
P 		270.9
(-1.6)
P 		300.8
(-0.8)
P 		220.8
(-3)
P 		215
avr 397.1
(3) 		230.8
(-2.5) 		215.2
(-3) 		257.5
(-1.6) 		182

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 258
1 2 3 4 5 6 range
A 164.9
(-3)
P 		299.1
(3)
P 		250.2
(0.8)
P 		201.7
(-1.4)
P 		212.3
(-0.9)
P 		190.2
(-1.9)
P 		134
B 377.9
(3)
P 		319.2
(1.2)
P 		257.8
(-0.6)
P 		178.6
(-3)
P 		326.8
(1.5)
P 		350.4
(2.2)
P 		199
C 356.5
(3)
P 		276.5
(1)
P 		195.8
(-1.1)
P 		120.1
(-3)
P 		229.6
(-0.2)
P 		353.4
(2.9)
P 		236
avr 299.8
(3) 		298.3
(2.9) 		234.6
(0.1) 		166.8
(-3) 		256.2
(1) 		298
(2.9) 		133
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182900_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12355
Sequence Type Exemplar sequence
Representative Public ID K07B1.5 NCBI
Target Description K07B1.5 /REP_DB=WormBase Gene ID /WP=CE27392 /TR=O01882 /GB=AAK71374.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073011(11), NM_073010(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073011 NCBI Caenorhabditis elegans ACyLtransferase-like family member (acl-14) (acl-14) mRNA, complete cds. 11/11 A 
NM_073010 NCBI Caenorhabditis elegans ACyLtransferase-like family member (acl-14) (acl-14) mRNA, complete cds. 11/11 A 
SNAP00000012083 ENSEMBL cdna:SNAP chromosome:CEL140:V:9332630:9335611:-1 11/11 None
GENEFINDER00000012094 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9334111:9335646:-1 11/11 None
K07B1.5a.1 ENSEMBL cdna:known chromosome:CEL140:V:9329764:9335646:-1 gene:K07B1.5 11/11 None
K07B1.5a.2 ENSEMBL cdna:known chromosome:CEL140:V:9329764:9335648:-1 gene:K07B1.5 11/11 None
K07B1.5b ENSEMBL cdna:known chromosome:CEL140:V:9330019:9335646:-1 gene:K07B1.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9334102-9335611(-) 100.0 100.0
Public Domain and Genome References
Ensembl K07B1.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK71374 Acyltransferase-like protein 14, isoform a [Caenorhabditis elegans] ref|NP_505412.2| ACyLtransferase-like family member (acl-14) [Caenorhabditis elegans] 0.0
blast AAL08040 Acyltransferase-like protein 14, isoform b [Caenorhabditis elegans] ref|NP_505411.1| ACyLtransferase-like family member (acl-14) [Caenorhabditis elegans] 0.0
blast CAE72153 Hypothetical protein CBG19251 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002123 EMBL-EBI Phospholipid/glycerol acyltransferase 2.4E-6
Pfam IPR002123 EMBL-EBI Phospholipid/glycerol acyltransferase 2.4E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505412.2 1 46-68
NP_505411.1 1 48-70
K07B1.5a.1 1 46-68
K07B1.5a.2 1 46-68
K07B1.5b 1 48-70
SNAP00000012083 1 46-68
Sequence
Target Sequence 
>C. ELEGANS:182900_AT
gaaaactctacagatggcttcaatcatttattgcctactggggttatacagctggatatg
acgtttacgagtatggagatgatgttacaacttactacagagatgaacgagttttaatga
tgtgcaatcatcaaagtactgctgatgtgccaacactgatgacagttcttcaaaataagg
gggttgcaagtagaaagactctttggttgatggatgtaatgttccgttggactccatttg
gaattattggaaataaccatggagattatttcattcaacaaggaaaagcgacacgtgaca
aggaacttataagactgaagaagcatttgcacgacgttttctgggatcgtgatcgtcgat
gggttattcttttcccagaaggtggattctactacaaacgagttgaaagcagccagagct
acggtaaaaagaatggtttcccacatcttctctacacaacacttcctcgcatgggagcag
ttcaggctattcttgaggaggttggacccagaacagaagattctgatgagccgagagagc
gtagtaatagtaaattgaaactcttgcaagacactgttggtgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAACTCTACAGATGGCTTCAATC 453 355 254 Antisense
GGCTTCAATCATTTATTGCCTACTG 632 537 269 Antisense
TGCCTACTGGGGTTATACAGCTGGA 382 583 285 Antisense
GCTGATGTGCCAACACTGATGACAG 585 295 394 Antisense
GTAATGTTCCGTTGGACTCCATTTG 161 461 469 Antisense
GAAGCATTTGCACGACGTTTTCTGG 572 341 573 Antisense
GAAGGTGGATTCTACTACAAACGAG 283 335 631 Antisense
AAAAGAATGGTTTCCCACATCTTCT 131 133 680 Antisense
AACACTTCCTCGCATGGGAGCAGTT 136 135 711 Antisense
GGGAGCAGTTCAGGCTATTCTTGAG 112 495 726 Antisense
AACTCTTGCAAGACACTGTTGGTGC 35 139 812 Antisense
Sequence Source Affymetrix Proprietary Database