[Home] | [Total List]

[182899_at]

Description ZC155.2 /REP_DB=WormBase Gene ID /WP=CE01432 /TR=Q23245 /GB=AAB52703.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 23      4grp_total > 38      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 85.3
(3)
A 		39.9
(-0.7)
A 		11.3
(-3)
A 		37.5
(-0.9)
A 		74
B 72.7
(3)
A 		36.8
(-0.3)
A 		7.7
(-3)
A 		33.6
(-0.6)
A 		65
C 95.7
(3)
A 		45
(-3)
A 		46
(-2.9)
A 		90.5
(2.4)
M 		51
avr 84.6
(3) 		40.6
(-1.2) 		21.7
(-3) 		53.9
(0.1) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 128
1 2 3 4 5 6 range
A 98.5
(1.3)
A 		85.4
(0.7)
M 		134.8
(3)
P 		63.7
(-0.3)
A 		28.7
(-2)
A 		7.2
(-3)
A 		128
B 59.3
(0.2)
A 		84.8
(3)
P 		70
(1.4)
P 		49.9
(-0.9)
A 		30.5
(-3)
A 		42.7
(-1.7)
A 		54
C 74.3
(2.7)
A 		76.9
(3)
A 		36.6
(-2.2)
A 		68.5
(1.9)
A 		30.1
(-3)
A 		62.9
(1.2)
P 		47
avr 77.4
(2.4) 		82.4
(3) 		80.5
(2.8) 		60.7
(0.5) 		29.8
(-3) 		37.6
(-2.1) 		53
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 31
(3)
A 		8.7
(-1.8)
A 		3
(-3)
A 		5.5
(-2.5)
A 		28
B 23.2
(3)
A 		9.1
(-1)
A 		1.8
(-3)
A 		7.2
(-1.5)
A 		21
C 31.7
(3)
A 		13
(-3)
A 		16
(-2)
A 		15.3
(-2.3)
M 		19
avr 28.6
(3) 		10.3
(-2.1) 		6.9
(-3) 		9.3
(-2.3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 18.2
(0.4)
A 		30.4
(3)
M 		29.4
(2.8)
P 		16.1
(0)
A 		8.7
(-1.6)
A 		1.8
(-3)
A 		29
B 20.6
(0.1)
A 		28.2
(3)
P 		17
(-1.3)
P 		13.2
(-2.7)
A 		12.4
(-3)
A 		15.9
(-1.7)
A 		16
C 27.6
(3)
A 		23.5
(1.7)
A 		9.3
(-3)
A 		13.8
(-1.5)
A 		9.7
(-2.9)
A 		21.1
(0.9)
P 		18
avr 22.1
(1.1) 		27.4
(3) 		18.6
(-0.1) 		14.4
(-1.6) 		10.3
(-3) 		12.9
(-2.1) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182899_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7596
Sequence Type Exemplar sequence
Representative Public ID ZC155.2 NCBI
Target Description ZC155.2 /REP_DB=WormBase Gene ID /WP=CE01432 /TR=Q23245 /GB=AAB52703.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065707(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065707 NCBI Caenorhabditis elegans ZC155.2 (ZC155.2) mRNA, complete cds. 11/11 None
SNAP00000027526 ENSEMBL cdna:SNAP chromosome:CEL140:III:5219262:5220005:1 11/11 None
GENEFINDER00000027531 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5219262:5221783:1 11/11 None
ZC155.2 ENSEMBL cdna:known chromosome:CEL140:III:5219262:5220005:1 gene:ZC155.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5219260-5220004(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC155.2
Entrez Gene 191089 Entrez gene
SwissProt Q23245 EMBL-EBI
WormBase CE01432 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52703 Hypothetical protein ZC155.2 [Caenorhabditis elegans] ref|NP_498108.1| ZC155.2 [Caenorhabditis elegans] 6.0E-94
blast AAB52703 Hypothetical protein ZC155.2 [Caenorhabditis elegans] ref|NP_498108.1| ZC155.2 [Caenorhabditis elegans] 1.0E-93
Sequence
Target Sequence 
>C. ELEGANS:182899_AT
tccaaatgttccaaatcgtgtgaccataccggacggtgatctacgtcgaaactcagatga
tacggcaactgatagaatttcgctaacaaatcaactaggaaaatctgcatattcaacaac
tacagaagattcgattgattctgaaacttctgaaactagaatggattcatctagaacgtc
tgaaatttccggaaatgtaaaagaggatccggtatcggaaaatcaatatgttctagaaaa
ttctgaaagttcagaaagtattgtcgtagatcttgagatgcctggaatgactcttcgatc
caaggccagtcctcgaaaacgctatatgtctaaaaaagaaaaagatcttaacgatgaaaa
aaaaaacttcaaggacctggttctgacgattggccaaaatcaaattcaagatcctgatga
agatttccaaataacaaaagaagcaattgatctacttcaatcggaatctgataaaattct
tctggaaatgttcacatcttcgaatgcaattgcaactgctggtgagagggatattttgac
tcccaccgacattcagacggctcgacacatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCAAATGTTCCAAATCGTGTGACC 71 589 54 Antisense
TCGTGTGACCATACCGGACGGTGAT 636 605 69 Antisense
ACGGTGATCTACGTCGAAACTCAGA 618 93 86 Antisense
AGATGCCTGGAATGACTCTTCGATC 504 67 329 Antisense
ATGACTCTTCGATCCAAGGCCAGTC 189 43 340 Antisense
AAGGCCAGTCCTCGAAAACGCTATA 102 161 355 Antisense
AAGGACCTGGTTCTGACGATTGGCC 239 159 424 Antisense
AATGTTCACATCTTCGAATGCAATT 64 165 540 Antisense
GAATGCAATTGCAACTGCTGGTGAG 596 331 555 Antisense
GAGGGATATTTTGACTCCCACCGAC 82 401 579 Antisense
CGACATTCAGACGGCTCGACACATT 552 249 600 Antisense
Sequence Source Affymetrix Proprietary Database