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[182898_at]

Description C49A9.4 /REP_DB=WormBase Gene ID /WP=CE27111 /TR=O44152 /GB=AAK29793.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 04      6grp_high1_10_10 > 32      4grp_highest_8_8 > 50      4grp_high_8_8 > 33      6grp_highest_nonorm > 80      6grp_total > 32      4grp_total > 46      6grp_high1_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 343
1 2 3 4 range
A 483.4
(3)
P 		265
(-1.1)
P 		200.4
(-2.3)
P 		163.8
(-3)
P 		320
B 411.7
(3)
P 		213.7
(-1.4)
P 		155.5
(-2.7)
P 		140.9
(-3)
P 		271
C 435.1
(3)
P 		195.4
(-3)
P 		211
(-2.6)
P 		252.1
(-1.6)
P 		240
avr 443.4
(3) 		224.7
(-2.1) 		189
(-2.9) 		185.6
(-3) 		258

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 252
1 2 3 4 5 6 range
A 211.6
(-0.2)
P 		325
(3)
P 		311.9
(2.6)
P 		212.8
(-0.2)
P 		176.3
(-1.3)
P 		115.3
(-3)
P 		210
B 163.2
(-0.7)
P 		224.4
(1.1)
P 		288
(3)
P 		187.5
(0)
P 		179.1
(-0.2)
P 		85.3
(-3)
P 		203
C 295.8
(2.5)
P 		243
(1.2)
P 		315.9
(3)
P 		238.3
(1.1)
P 		163.5
(-0.8)
P 		72.9
(-3)
P 		243
avr 223.5
(0.7) 		264.1
(1.8) 		305.3
(3) 		212.9
(0.4) 		173
(-0.7) 		91.2
(-3) 		214
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 152
1 2 3 4 range
A 176
(3)
P 		57.5
(-1.7)
P 		52.4
(-1.9)
P 		24
(-3)
P 		152
B 131.3
(3)
P 		52.8
(-1.6)
P 		36
(-2.6)
P 		30
(-3)
P 		101
C 144
(3)
P 		56.2
(-2.2)
P 		73.6
(-1.2)
P 		42.5
(-3)
P 		102
avr 150.4
(3) 		55.5
(-1.8) 		54
(-1.9) 		32.2
(-3) 		118

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 39
(-2.3)
P 		115.6
(3)
P 		67.9
(-0.3)
P 		54
(-1.2)
P 		53.2
(-1.3)
P 		28.1
(-3)
P 		88
B 56.8
(0.5)
P 		74.7
(3)
P 		69.9
(2.3)
P 		49.7
(-0.5)
P 		72.8
(2.7)
P 		31.8
(-3)
P 		43
C 109.6
(3)
P 		74.1
(0.5)
P 		80.4
(0.9)
P 		47.9
(-1.3)
P 		52.9
(-1)
P 		24.4
(-3)
P 		85
avr 68.5
(1) 		88.1
(3) 		72.7
(1.5) 		50.5
(-0.8) 		59.6
(0.2) 		28.1
(-3) 		60
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182898_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10922
Sequence Type Exemplar sequence
Representative Public ID C49A9.4 NCBI
Target Description C49A9.4 /REP_DB=WormBase Gene ID /WP=CE27111 /TR=O44152 /GB=AAK29793.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068534(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068534 NCBI Caenorhabditis elegans C49A9.4 (C49A9.4) mRNA, complete cds. 10/11 None
SNAP00000001924 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6219710:6221832:1 10/11 None
GENEFINDER00000001927 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6219710:6221832:1 10/11 None
C49A9.4 ENSEMBL cdna:known chromosome:CEL140:IV:6219588:6222330:1 gene:C49A9.4 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2463781-2466269(+) 55.53 55.53
chrIV:6217424-6221838(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C49A9.4
Entrez Gene 3565549 Entrez gene
SwissProt O44152 EMBL-EBI
WormBase CE37492 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK29793 Hypothetical protein C49A9.4 [Caenorhabditis elegans] ref|NP_500935.2| C49A9.4 [Caenorhabditis elegans] 0.0
blast T32521 hypothetical protein C49A9.4 - Caenorhabditis elegans 0.0
blast AAC68768 Hypothetical protein E02H9.2 [Caenorhabditis elegans] ref|NP_497562.1| E02H9.2 [Caenorhabditis elegans] 5.0E-75
Protein Domains
Database ID Description E-Value
Pfam IPR004987 EMBL-EBI Protein of unknown function DUF272 9.7E-78
Sequence
Target Sequence 
>C. ELEGANS:182898_AT
aagcaagacgccaacgcgtacgatttctactgactctcgagatggttatacaattgagca
gttaatcgaaaaacttcccactctggaacttgaaggaatcgaaaatagcgtaccggtccc
acaaaaaccttctgcccaaaatctgatgaaggcatttgtccattctgttctccaacaccc
aaaccaggttaaaatgcattttatatggatttgtggcttaaacaaaaacgccgtactcaa
actgcccatgcatgacttagagctgggacactttttcgaaggaatttttgaggaaaagcc
taacggaagttgggagtgcacgagacatttgagagaaattgagccacttcttaatggaat
tattgtccagaatggaaaaaaggaaaaggtagagctgataagcacaatcacgcaatatca
accagcatcgattagcttgaagtatgcacaaggatatgtgaatcatctgggagttgtgta
tgacaagaactcaaggctgaacccagactct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCAAGACGCCAACGCGTACGATT 457 151 2247 Antisense
GCGTACGATTTCTACTGACTCTCGA 674 291 2262 Antisense
AAACTTCCCACTCTGGAACTTGAAG 561 123 2317 Antisense
TCGAAAATAGCGTACCGGTCCCACA 70 599 2345 Antisense
AAAACCTTCTGCCCAAAATCTGATG 553 131 2370 Antisense
TGAAGGCATTTGTCCATTCTGTTCT 609 575 2393 Antisense
GTACTCAAACTGCCCATGCATGACT 515 459 2479 Antisense
GACTTAGAGCTGGGACACTTTTTCG 107 373 2500 Antisense
GAAGTTGGGAGTGCACGAGACATTT 604 335 2552 Antisense
AGCACAATCACGCAATATCAACCAG 255 77 2647 Antisense
GAACTCAAGGCTGAACCCAGACTCT 205 347 2733 Antisense
Sequence Source Affymetrix Proprietary Database