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[182897_at]

Description ZC190.6 /REP_DB=WormBase Gene ID /WP=CE19640 /TR=O76701 /GB=AAC26966.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 22      4grp_total > 23      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 86.4
(3)
P 		37.7
(-1.4)
A 		19.3
(-3)
A 		78.3
(2.3)
A 		67
B 117
(3)
P 		9.4
(-2.9)
A 		7
(-3)
A 		57.4
(-0.3)
A 		110
C 125.4
(3)
P 		6.9
(-3)
A 		12.6
(-2.7)
A 		76.7
(0.5)
A 		119
avr 109.6
(3) 		18
(-2.7) 		13
(-3) 		70.8
(0.6) 		97

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 116
1 2 3 4 5 6 range
A 77.6
(2)
A 		51.5
(0.1)
A 		91.7
(3)
A 		20
(-2.2)
A 		10.6
(-2.9)
A 		8.6
(-3)
A 		83
B 65.7
(3)
A 		55.2
(1.9)
A 		31.9
(-0.5)
A 		59.9
(2.4)
A 		46.4
(1)
A 		7
(-3)
A 		59
C 52
(-0.5)
A 		120.5
(3)
A 		73.3
(0.6)
A 		9.4
(-2.8)
A 		27.6
(-1.8)
A 		4.7
(-3)
A 		116
avr 65.1
(2.1) 		75.7
(3) 		65.6
(2.1) 		29.8
(-1) 		28.2
(-1.1) 		6.8
(-3) 		69
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 31.5
(3)
P 		8.2
(-2.3)
A 		5.1
(-3)
A 		11.5
(-1.5)
A 		26
B 37.3
(3)
P 		2.3
(-2.9)
A 		1.6
(-3)
A 		12.2
(-1.2)
A 		36
C 41.5
(3)
P 		2
(-3)
A 		4.4
(-2.6)
A 		12.9
(-1.3)
A 		40
avr 36.8
(3) 		4.2
(-2.9) 		3.7
(-3) 		12.2
(-1.5) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 14.3
(1.1)
A 		18.3
(2.4)
A 		20
(3)
A 		5.1
(-2)
A 		3.2
(-2.6)
A 		2.1
(-3)
A 		18
B 22.9
(3)
A 		18.4
(1.7)
A 		7.7
(-1.5)
A 		15.9
(0.9)
A 		18.8
(1.8)
A 		2.6
(-3)
A 		20
C 19.3
(0)
A 		36.8
(3)
A 		18.6
(-0.1)
A 		1.9
(-2.9)
A 		8.9
(-1.8)
A 		1.6
(-3)
A 		35
avr 18.8
(1.5) 		24.5
(3) 		15.4
(0.6) 		7.6
(-1.5) 		10.3
(-0.8) 		2.1
(-3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182897_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12342
Sequence Type Exemplar sequence
Representative Public ID ZC190.6 NCBI
Target Description ZC190.6 /REP_DB=WormBase Gene ID /WP=CE19640 /TR=O76701 /GB=AAC26966.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072834(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072834 NCBI Caenorhabditis elegans ZC190.6 (ZC190.6) mRNA, complete cds. 11/11 None
GENEFINDER00000000646 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8677190:8679881:-1 11/11 None
ZC190.6 ENSEMBL cdna:known chromosome:CEL140:V:8677190:8679881:-1 gene:ZC190.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8677190-8679882(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC190.6
Entrez Gene 191096 Entrez gene
SwissProt O76701 EMBL-EBI
WormBase CE19640 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC26966 Hypothetical protein ZC190.6 [Caenorhabditis elegans] ref|NP_505235.1| ZC190.6 [Caenorhabditis elegans] 0.0
blast CAE58337 Hypothetical protein CBG01451 [Caenorhabditis briggsae] 1.0E-159
blast CAE58337 Hypothetical protein CBG01451 [Caenorhabditis briggsae] 1.0E-154
blast AAC26964 Hypothetical protein ZC190.5 [Caenorhabditis elegans] ref|NP_505234.1| ZC190.5 [Caenorhabditis elegans] 2.0E-10
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505235.1 12 7-29,44-66,123-145,149-171,203-225,235-257,277-299,314-332,362-384,389-411,443-465,480-499
ZC190.6 12 7-29,44-66,123-145,149-171,203-225,235-257,277-299,314-332,362-384,389-411,443-465,480-499
GENEFINDER00000000646 12 7-29,44-66,123-145,149-171,203-225,235-257,278-300,315-334,364-386,391-413,445-467,482-501
Sequence
Target Sequence 
>C. ELEGANS:182897_AT
gaaatcaggtattgtccattacattaggtgtcattatctccattttatcaatgtgctatg
ctcaaattattcacttggtggatttccacgtgatcgccatcacaataatgaacctggttg
acatgtctgcattagtgattttaattatctcatcacaatattccattcaaaattatagaa
aaaccgctggaattgcgtccctcgaaaaaagatttcagatttctgatgtttacatctgga
cacaagcaataattccagtagcttgtattgcatttttgatacattttacttttgttattg
tggtttggcttttgtcaactcttgaaaacagtagatactatcagatgactttttcacatt
attttgaaaatatcacaagtgttttcactatctgtgtcccatttttagttgtctataagc
acaaaagaataaagaaaacgaaactattaaatcgaagccgaatcggtccacaaaatcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAATCAGGTATTGTCCATTACATT 465 361 1094 Antisense
GGTGTCATTATCTCCATTTTATCAA 143 499 1120 Antisense
ATTATTCACTTGGTGGATTTCCACG 66 13 1159 Antisense
TTCCACGTGATCGCCATCACAATAA 600 701 1177 Antisense
GAACCTGGTTGACATGTCTGCATTA 136 347 1203 Antisense
GAAAAACCGCTGGAATTGCGTCCCT 334 355 1271 Antisense
AATTCCAGTAGCTTGTATTGCATTT 610 177 1344 Antisense
GGTTTGGCTTTTGTCAACTCTTGAA 360 505 1395 Antisense
AAGTGTTTTCACTATCTGTGTCCCA 372 159 1470 Antisense
CTGTGTCCCATTTTTAGTTGTCTAT 51 241 1485 Antisense
AAGCCGAATCGGTCCACAAAATCAA 616 145 1548 Antisense
Sequence Source Affymetrix Proprietary Database