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[182896_at]

Description F21E9.2 /REP_DB=WormBase Gene ID /WP=CE09526 /TR=O16585 /GB=AAC70877.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 70      6grp_total > 91      4grp_total > 50      6grp_high1_sub > 04      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 273
1 2 3 4 range
A 41
(-2.2)
A 		230.8
(3)
P 		180.3
(1.6)
P 		10.9
(-3)
A 		220
B 9.9
(-2.9)
A 		231.3
(3)
P 		204.5
(2.3)
P 		7.4
(-3)
A 		224
C 2.9
(-3)
A 		275.7
(3)
P 		185.6
(1)
P 		44.5
(-2.1)
A 		273
avr 17.9
(-3) 		245.9
(3) 		190.1
(1.5) 		20.9
(-2.9) 		228

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 186
1 2 3 4 5 6 range
A 156.5
(-0)
P 		225.9
(3)
P 		115.5
(-1.8)
P 		182.3
(1.1)
P 		204.5
(2.1)
P 		88.5
(-3)
P 		137
B 136.5
(0.7)
P 		145
(1)
P 		114.8
(-0.1)
P 		197
(3)
P 		185.1
(2.5)
P 		40.4
(-3)
A 		157
C 124.2
(-0.8)
P 		148.6
(0.5)
P 		96.9
(-2.2)
A 		196.9
(3)
P 		81.6
(-3)
P 		82.3
(-3)
P 		115
avr 139.1
(0.4) 		173.2
(2.1) 		109.1
(-1.1) 		192.1
(3) 		157.1
(1.3) 		70.4
(-3) 		122
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 14.9
(-1.4)
A 		50.1
(3)
P 		47.1
(2.6)
P 		1.6
(-3)
A 		49
B 3.2
(-2.8)
A 		57.1
(3)
P 		47.4
(2)
P 		1.6
(-3)
A 		56
C 1
(-3)
A 		79.3
(3)
P 		64.7
(1.9)
P 		7.5
(-2.5)
A 		78
avr 6.4
(-2.7) 		62.2
(3) 		53.1
(2.1) 		3.6
(-3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 28.8
(-2.3)
P 		80.4
(3)
P 		25.2
(-2.6)
P 		46.2
(-0.5)
P 		61.7
(1.1)
P 		21.5
(-3)
P 		59
B 47.5
(0.2)
P 		48.3
(0.3)
P 		27.9
(-1.7)
P 		52.2
(0.7)
P 		75.2
(3)
P 		15
(-3)
A 		60
C 46
(3)
P 		45.3
(2.8)
P 		24.7
(-3)
A 		39.6
(1.2)
P 		26.4
(-2.5)
P 		27.5
(-2.2)
P 		21
avr 40.8
(0.2) 		58
(3) 		25.9
(-2.2) 		46
(1) 		54.4
(2.4) 		21.3
(-3) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182896_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18212
Sequence Type Exemplar sequence
Representative Public ID F21E9.2 NCBI
Target Description F21E9.2 /REP_DB=WormBase Gene ID /WP=CE09526 /TR=O16585 /GB=AAC70877.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075843(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075843 NCBI Caenorhabditis elegans F21E9.2 (F21E9.2) mRNA, complete cds. 11/11 None
GENEFINDER00000024982 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1328811:1329935:-1 11/11 None
SNAP00000024975 ENSEMBL cdna:SNAP chromosome:CEL140:X:1328897:1329935:-1 10/11 None
F21E9.2 ENSEMBL cdna:known chromosome:CEL140:X:1328864:1329935:-1 gene:F21E9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1328863-1329935(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F21E9.2
Entrez Gene 184781 Entrez gene
SwissProt O16585 EMBL-EBI
WormBase CE09526 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC70877 Hypothetical protein F21E9.2 [Caenorhabditis elegans] ref|NP_508244.1| F21E9.2 [Caenorhabditis elegans] 3.0E-74
blast AAC70877 Hypothetical protein F21E9.2 [Caenorhabditis elegans] ref|NP_508244.1| F21E9.2 [Caenorhabditis elegans] 8.0E-71
blast AAC70877 Hypothetical protein F21E9.2 [Caenorhabditis elegans] ref|NP_508244.1| F21E9.2 [Caenorhabditis elegans] 3.0E-68
blast CAE63572 Hypothetical protein CBG08060 [Caenorhabditis briggsae] 1.0E-65
blast CAE63572 Hypothetical protein CBG08060 [Caenorhabditis briggsae] 2.0E-65
blast CAE63572 Hypothetical protein CBG08060 [Caenorhabditis briggsae] 7.0E-65
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508244.1 1 97-119
F21E9.2 1 97-119
GENEFINDER00000024982 1 97-119
SNAP00000024975 1 97-119
Sequence
Target Sequence 
>C. ELEGANS:182896_AT
ggaacaagcctacctagcttcaacgatgactacaacgacaacaaacgtggcaactgctgc
tcaaaaccttgtccgccacagcctaggtggtttcatccgtcaagaagtgtccgaaaccgg
tcagactatctgcttctaccgctataacacagccgacacagcaatcccatacctttgcga
acttggatgttgcagccatggatgttgtactatttcggatcttgctgcacgcagtacatc
gtttggctgggcgatagctcttctggttatggtgctcataaccatcgtgtttgctgtcct
tgctctgctcaccgtttggctcatgaaccggcataaggatcgaattcacaagcagcactt
agcagagagtgttattgagagcccgtcagttagtcaagtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAACAAGCCTACCTAGCTTCAACG 594 527 48 Antisense
CACAGCCTAGGTGGTTTCATCCGTC 221 185 124 Antisense
ACCGGTCAGACTATCTGCTTCTACC 632 87 163 Antisense
TGCTTCTACCGCTATAACACAGCCG 549 579 178 Antisense
CAATCCCATACCTTTGCGAACTTGG 170 183 209 Antisense
TACTATTTCGGATCTTGCTGCACGC 603 645 255 Antisense
GCTGCACGCAGTACATCGTTTGGCT 441 297 271 Antisense
GCGATAGCTCTTCTGGTTATGGTGC 487 291 298 Antisense
CATAACCATCGTGTTTGCTGTCCTT 680 211 324 Antisense
AGGATCGAATTCACAAGCAGCACTT 707 55 383 Antisense
TGAGAGCCCGTCAGTTAGTCAAGTG 586 565 423 Antisense
Sequence Source Affymetrix Proprietary Database