[Home] | [Total List]

[182894_at]

Description H25K10.2 /REP_DB=WormBase Gene ID /WP=CE19934 /TR=Q9XU19 /GB=CAB07230.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 4.5
(-2.7)
A 		3.4
(-3)
A 		3.6
(-2.9)
A 		23.1
(3)
A 		20
B 7
(-0.1)
A 		4.1
(-3)
A 		4.7
(-2.4)
A 		10.2
(3)
A 		6
C 3.3
(-2.9)
A 		4.6
(-2.8)
A 		1.9
(-3)
A 		83.2
(3)
A 		81
avr 4.9
(-2.7) 		4
(-2.9) 		3.4
(-3) 		38.8
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 5.3
(-1.4)
A 		3.2
(-3)
A 		7
(-0.2)
A 		8.4
(0.9)
A 		11.2
(3)
A 		3.4
(-2.9)
A 		8
B 10.1
(3)
A 		3
(-2.3)
A 		6.3
(0.1)
A 		5.1
(-0.8)
A 		2.1
(-3)
A 		4.3
(-1.4)
A 		8
C 13.8
(3)
A 		4.7
(-1.8)
A 		5.8
(-1.2)
A 		7.1
(-0.5)
A 		4
(-2.2)
A 		2.4
(-3)
A 		11
avr 9.7
(3) 		3.6
(-2.8) 		6.4
(-0.1) 		6.9
(0.3) 		5.8
(-0.7) 		3.4
(-3) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 1.6
(-1)
A 		0.7
(-3)
A 		0.9
(-2.6)
A 		3.4
(3)
A 		3
B 2.2
(3)
A 		1
(-3)
A 		1.1
(-2.5)
A 		2.2
(3)
A 		1
C 1.1
(-2.8)
A 		1.3
(-2.7)
A 		0.7
(-3)
A 		14
(3)
A 		13
avr 1.6
(-2.3) 		1
(-2.9) 		0.9
(-3) 		6.5
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 1
(-2.5)
A 		1.1
(-2.3)
A 		1.5
(-1.4)
A 		2.1
(0)
A 		3.4
(3)
A 		0.8
(-3)
A 		3
B 3.5
(3)
A 		1
(-2.6)
A 		1.5
(-1.4)
A 		1.4
(-1.7)
A 		0.8
(-3)
A 		1.6
(-1.2)
A 		3
C 5.1
(3)
A 		1.4
(-2.2)
A 		1.5
(-2)
A 		1.4
(-2.2)
A 		1.3
(-2.3)
A 		0.8
(-3)
A 		4
avr 3.2
(3) 		1.2
(-2.7) 		1.5
(-1.9) 		1.6
(-1.6) 		1.8
(-1) 		1.1
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182894_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10236
Sequence Type Exemplar sequence
Representative Public ID H25K10.2 NCBI
Target Description H25K10.2 /REP_DB=WormBase Gene ID /WP=CE19934 /TR=Q9XU19 /GB=CAB07230.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070520(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070520 NCBI Caenorhabditis elegans H25K10.2 (H25K10.2) mRNA, complete cds. 11/11 None
SNAP00000037533 ENSEMBL cdna:SNAP chromosome:CEL140:IV:16210684:16210974:-1 11/11 None
GENEFINDER00000037542 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16210463:16210974:-1 11/11 None
H25K10.2 ENSEMBL cdna:known chromosome:CEL140:IV:16210463:16210974:-1 gene:H25K10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16210468-16210980(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H25K10.2
Entrez Gene 186778 Entrez gene
SwissProt Q9XU19 EMBL-EBI
WormBase CE19934 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07230 Hypothetical protein H25K10.2 [Caenorhabditis elegans] ref|NP_502921.1| H25K10.2 [Caenorhabditis elegans] 1.0E-41
blast CAB07230 Hypothetical protein H25K10.2 [Caenorhabditis elegans] ref|NP_502921.1| H25K10.2 [Caenorhabditis elegans] 4.0E-40
blast AAY86233 Hypothetical protein F56C3.10 [Caenorhabditis elegans] 7.0E-33
blast AAY86233 Hypothetical protein F56C3.10 [Caenorhabditis elegans] 9.0E-30
Sequence
Target Sequence 
>C. ELEGANS:182894_AT
ggaacagcttgtaaaggatgccgaagagatatgccgtatccaaactctcatgtatgaaga
gagaatggctcgagtagctttggagactctaagttcatcagtcccagcactcaaaagagt
tccgtcaacttctaaaattccaccggaatccatatctcaatacaaacgttgggcagcgat
gaagattgactttccagaagcacaaccaccaaaaagcaaaaaagatacggtttccagttc
ggagcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAACAGCTTGTAAAGGATGCCGAA 384 529 33 Antisense
GGATGCCGAAGAGATATGCCGTATC 18 513 48 Antisense
TGCCGTATCCAAACTCTCATGTATG 484 583 64 Antisense
GAATGGCTCGAGTAGCTTTGGAGAC 1 333 95 Antisense
GGAGACTCTAAGTTCATCAGTCCCA 201 519 114 Antisense
TCATCAGTCCCAGCACTCAAAAGAG 33 619 127 Antisense
TCCGTCAACTTCTAAAATTCCACCG 656 593 153 Antisense
CCACCGGAATCCATATCTCAATACA 12 275 172 Antisense
GGGCAGCGATGAAGATTGACTTTCC 539 493 203 Antisense
TGACTTTCCAGAAGCACAACCACCA 369 569 219 Antisense
GATACGGTTTCCAGTTCGGAGCAAT 80 425 256 Antisense
Sequence Source Affymetrix Proprietary Database