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[182892_at]

Description ZK488.5 /REP_DB=WormBase Gene ID /WP=CE15359 /TR=O17019 /GB=AAB69952.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 44      4grp_total > 03      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 1.9
(-3)
A 		6.9
(-2.7)
A 		7.7
(-2.7)
A 		107.6
(3)
A 		106
B 26.4
(-0.3)
A 		16.3
(-1.9)
A 		9.4
(-3)
A 		47.2
(3)
A 		38
C 33.9
(-1)
A 		3.6
(-3)
A 		10.2
(-2.6)
A 		93
(3)
A 		89
avr 20.7
(-2) 		8.9
(-3) 		9.1
(-3) 		82.6
(3) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 11.2
(-0.8)
A 		7
(-2)
A 		24.8
(3)
A 		3.9
(-2.9)
A 		3.6
(-3)
A 		19.1
(1.4)
A 		21
B 3.1
(-2.1)
A 		10.1
(3)
A 		5
(-0.7)
A 		1.8
(-3)
A 		7.1
(0.8)
A 		2.3
(-2.6)
A 		8
C 8.6
(-0.7)
A 		11.6
(0.5)
A 		17.7
(3)
A 		4.8
(-2.2)
A 		2.9
(-3)
A 		4
(-2.6)
A 		15
avr 7.6
(-1) 		9.6
(-0) 		15.8
(3) 		3.5
(-3) 		4.5
(-2.5) 		8.5
(-0.6) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 0.7
(-3)
A 		1.5
(-2.7)
A 		2
(-2.5)
A 		15.7
(3)
A 		15
B 8.4
(1.7)
A 		4
(-1.6)
A 		2.2
(-3)
A 		10.1
(3)
A 		8
C 11.2
(1.2)
A 		1
(-3)
A 		3.5
(-2)
A 		15.7
(3)
A 		15
avr 6.8
(-0.6) 		2.2
(-3) 		2.6
(-2.8) 		13.8
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 2.1
(-1.5)
A 		2.5
(-1)
A 		5.4
(3)
A 		1
(-3)
A 		1.1
(-2.9)
A 		4.7
(2)
A 		4
B 1.1
(-1.8)
A 		3.4
(3)
A 		1.2
(-1.6)
A 		0.5
(-3)
A 		2.9
(2)
A 		0.9
(-2.2)
A 		3
C 3.2
(0.8)
A 		3.5
(1.3)
A 		4.5
(3)
A 		1
(-2.8)
A 		0.9
(-3)
A 		1.3
(-2.3)
A 		4
avr 2.1
(-0.3) 		3.1
(1.8) 		3.7
(3) 		0.8
(-3) 		1.6
(-1.3) 		2.3
(0.1) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182892_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15923
Sequence Type Exemplar sequence
Representative Public ID ZK488.5 NCBI
Target Description ZK488.5 /REP_DB=WormBase Gene ID /WP=CE15359 /TR=O17019 /GB=AAB69952.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070856(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070856 NCBI Caenorhabditis elegans ZK488.5 (ZK488.5) mRNA, complete cds. 11/11 None
GENEFINDER00000016995 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:593103:595506:1 11/11 None
ZK488.5 ENSEMBL cdna:known chromosome:CEL140:V:593103:595506:1 gene:ZK488.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000016985 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:593102-595506(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK488.5
Entrez Gene 191330 Entrez gene
SwissProt O17019 EMBL-EBI
WormBase CE15359 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB69952 Hypothetical protein ZK488.5 [Caenorhabditis elegans] ref|NP_503257.1| ZK488.5 [Caenorhabditis elegans] 0.0
blast AAB69953 Hypothetical protein ZK488.6 [Caenorhabditis elegans] ref|NP_503256.1| ZK488.6 [Caenorhabditis elegans] 0.0
blast AAB94265 Hypothetical protein C14C6.7 [Caenorhabditis elegans] ref|NP_503242.1| C14C6.7 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:182892_AT
tgccaccaccgtaacaggtacttctcgaaatggacagcgttaatcgacattgatgagagg
ctggaaatgaagagtgacaaatttaaaatagtcgctgattatttggattcaattcaagac
gactcaattgcaaatctgcattttcgagtgaaatgggttatgaagcaccacgacacacct
gccaaatacgaaaatgaaacgcagttgaagagagaaatgctttttcataaataccaaaac
ttatctcaactcggcgctatttgggatcaaccaaaatgcataattcgtccagaaaacgtt
gcgattatgacaattcacggacccagggagatgtataaaggagaaaaaatgacggtggtg
ccagagaacgttggctttatcagacactatcgcaacgtggagctaagaatctttcataag
gcatttgagagaatgatgtcacatgctccattcaatatttcaccgattgataaggatatt
gatcaagatttatcgaaaaaaattatggaccgtgtaaagtggatttatgaaattgtgcaa
ccaacttgtgagcagaaagccaaaatgtatagagtcgagtccacaagtccttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCCACCACCGTAACAGGTACTTCT 543 583 955 Antisense
GGACAGCGTTAATCGACATTGATGA 61 527 986 Antisense
CACGACACACCTGCCAAATACGAAA 82 201 1123 Antisense
CCAAAACTTATCTCAACTCGGCGCT 379 273 1188 Antisense
AACTCGGCGCTATTTGGGATCAACC 471 139 1202 Antisense
AATTCGTCCAGAAAACGTTGCGATT 621 177 1236 Antisense
GACAATTCACGGACCCAGGGAGATG 25 363 1263 Antisense
ATGACGGTGGTGCCAGAGAACGTTG 166 45 1303 Antisense
CAGAGAACGTTGGCTTTATCAGACA 680 205 1316 Antisense
CAGACACTATCGCAACGTGGAGCTA 260 205 1335 Antisense
ATAGAGTCGAGTCCACAAGTCCTTC 641 21 1523 Antisense
Sequence Source Affymetrix Proprietary Database