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[182891_at]

Description M01H9.2 /REP_DB=WormBase Gene ID /WP=CE12306 /TR=Q95018 /GB=AAB09143.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 25      4grp_total > 53      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 99.4
(3)
P 		71
(-3)
A 		88.9
(0.8)
A 		96.9
(2.5)
A 		28
B 102.7
(3)
M 		101
(2.9)
A 		96.5
(2.6)
A 		15.6
(-3)
A 		87
C 76.3
(1.3)
P 		84.9
(3)
A 		54.5
(-3)
A 		59.1
(-2.1)
A 		30
avr 92.8
(3) 		85.6
(1.8) 		80
(0.8) 		57.2
(-3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 98.2
(0.5)
A 		139.2
(3)
A 		43.6
(-2.9)
A 		42.5
(-3)
A 		46.6
(-2.7)
A 		74.6
(-1)
A 		97
B 90.8
(3)
A 		75.6
(0.8)
P 		79
(1.3)
A 		49.4
(-3)
A 		50.4
(-2.9)
A 		53.6
(-2.4)
P 		41
C 110.5
(1.4)
A 		127.1
(3)
A 		106.2
(1)
A 		103.4
(0.8)
P 		64.1
(-3)
A 		63.6
(-3)
A 		64
avr 99.8
(1.6) 		114
(3) 		76.3
(-0.8) 		65.1
(-1.9) 		53.7
(-3) 		63.9
(-2) 		60
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 36.2
(3)
P 		15.4
(-2.7)
A 		23.2
(-0.5)
A 		14.2
(-3)
A 		22
B 32.7
(3)
M 		24.9
(1.4)
A 		22.4
(0.9)
A 		3.3
(-3)
A 		29
C 25.3
(3)
P 		24.4
(2.6)
A 		19
(0.5)
A 		10
(-3)
A 		15
avr 31.4
(3) 		21.6
(0.4) 		21.5
(0.3) 		9.2
(-3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 18.1
(-1.7)
A 		49.5
(3)
A 		9.5
(-3)
A 		10.8
(-2.8)
A 		14.1
(-2.3)
A 		18.2
(-1.7)
A 		40
B 31.6
(3)
A 		25.2
(0.9)
P 		19.2
(-1)
A 		13.1
(-3)
A 		20.5
(-0.6)
A 		20
(-0.8)
P 		19
C 41
(3)
A 		38.8
(2.3)
A 		27
(-1.2)
A 		20.8
(-3)
P 		20.8
(-3)
A 		21.3
(-2.9)
A 		20
avr 30.2
(1) 		37.8
(3) 		18.6
(-2) 		14.9
(-3) 		18.5
(-2.1) 		19.8
(-1.7) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182891_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11043
Sequence Type Exemplar sequence
Representative Public ID M01H9.2 NCBI
Target Description M01H9.2 /REP_DB=WormBase Gene ID /WP=CE12306 /TR=Q95018 /GB=AAB09143.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068173(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068173 NCBI Caenorhabditis elegans M01H9.2 (M01H9.2) mRNA, complete cds. 11/11 None
SNAP00000037482 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4460232:4462040:-1 11/11 None
GENEFINDER00000037489 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4460172:4462040:-1 11/11 None
M01H9.2 ENSEMBL cdna:known chromosome:CEL140:IV:4460603:4462040:-1 gene:M01H9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4460608-4462046(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M01H9.2
Entrez Gene 187390 Entrez gene
SwissProt Q95018 EMBL-EBI
WormBase CE12306 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4872 receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB09143 Hypothetical protein M01H9.2 [Caenorhabditis elegans] ref|NP_500574.1| M01H9.2 [Caenorhabditis elegans] 0.0
blast CAE58531 Hypothetical protein CBG01687 [Caenorhabditis briggsae] 0.0
blast CAE58531 Hypothetical protein CBG01687 [Caenorhabditis briggsae] 1.0E-171
blast CAE71118 Hypothetical protein CBG17971 [Caenorhabditis briggsae] 2.0E-9
Protein Domains
Database ID Description E-Value
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 9.7E-5
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.5E-4
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.6E-6
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.4E-8
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 2.0
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 4.5E-11
Sequence
Target Sequence 
>C. ELEGANS:182891_AT
gaatcgagcctatcagtgtgtacagtccgtactcgttcgttccagttcaaccgcaagttt
cacagccatactctccctggtccccgaccctcggactcagttcatctcttgactcttctc
gccgtgcaccacaaaattacttctcatcttactcccaataccctcagtacccggacgaaa
agctcaacacaattgctccaaatcccatgcaacttgtcgagccatttctgactcctgggc
aaaacgatctgaatccaaaatcgatgtcctcactgataaatctcctggggtgtaaggata
aggatgaggtgatttgtaagcacgtgactgcggatacatgtctctcccgacctggatatt
atcttaaattgtgcccggttacttgtaaaaattgcagtggataccaatgtatcgactcca
tcaaaatcgactgcgctgaggtgaaggctcaaggagcatgtaagctttcagtggccagtg
agtactgtccaaggacctgtgagtactgtaatccgcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCGAGCCTATCAGTGTGTACAG 452 329 569 Antisense
GTTCCAGTTCAACCGCAAGTTTCAC 280 441 607 Antisense
TTCTCGCCGTGCACCACAAAATTAC 544 693 684 Antisense
CAAAATTACTTCTCATCTTACTCCC 653 189 700 Antisense
ACACAATTGCTCCAAATCCCATGCA 479 111 755 Antisense
CATGCAACTTGTCGAGCCATTTCTG 268 211 774 Antisense
CCATTTCTGACTCCTGGGCAAAACG 63 271 790 Antisense
GATGTCCTCACTGATAAATCTCCTG 412 409 831 Antisense
CGTGACTGCGGATACATGTCTCTCC 551 245 891 Antisense
TCTCTCCCGACCTGGATATTATCTT 99 611 909 Antisense
GACCTGTGAGTACTGTAATCCGCCA 408 381 1062 Antisense
Sequence Source Affymetrix Proprietary Database