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[182890_at]

Description R01H10.5 /REP_DB=WormBase Gene ID /WP=CE20023 /TR=Q21621 /GB=CAA83464.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 20      4grp_high_8_8 > 35      6grp_total > 50      4grp_total > 44      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 71.2
(0.3)
P 		85.3
(3)
P 		54.3
(-3)
P 		55.5
(-2.8)
M 		31
B 69.8
(0.2)
P 		80.5
(3)
P 		57.6
(-3)
P 		61.3
(-2)
P 		23
C 84.5
(0.2)
P 		107.4
(3)
A 		58.8
(-3)
P 		61.8
(-2.6)
P 		49
avr 75.2
(0.2) 		91.1
(3) 		56.9
(-3) 		59.5
(-2.5) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 75.7
(2.7)
P 		50.7
(-0.6)
P 		69
(1.9)
P 		61.9
(0.9)
P 		32.5
(-3)
A 		77.6
(3)
P 		45
B 76.1
(1.4)
P 		76.8
(1.5)
P 		68.2
(0.6)
P 		91
(3)
P 		34
(-3)
P 		53.6
(-0.9)
P 		57
C 71.2
(0.8)
P 		55.9
(-1.4)
P 		86.3
(3)
P 		62.8
(-0.4)
P 		55.8
(-1.4)
P 		44.4
(-3)
P 		42
avr 74.3
(3) 		61.1
(0.6) 		74.5
(3) 		71.9
(2.5) 		40.8
(-3) 		58.5
(0.2) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 25.9
(3)
P 		18.5
(0.5)
P 		14.2
(-0.9)
P 		8.1
(-3)
M 		18
B 22.3
(3)
P 		19.9
(1.4)
P 		13.3
(-2.9)
P 		13.1
(-3)
P 		9
C 28
(2.2)
P 		30.9
(3)
A 		20.5
(-0)
P 		10.4
(-3)
P 		21
avr 25.4
(3) 		23.1
(2.1) 		16
(-0.8) 		10.5
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 13.9
(-0.3)
P 		18
(2.4)
P 		15
(0.4)
P 		15.7
(0.9)
P 		9.8
(-3)
A 		18.9
(3)
P 		9
B 26.5
(3)
P 		25.5
(2.5)
P 		16.6
(-1.7)
P 		24.1
(1.9)
P 		13.8
(-3)
P 		20
(-0.1)
P 		13
C 26.4
(3)
P 		17.1
(-1)
P 		22
(1.1)
P 		12.6
(-3)
P 		18
(-0.7)
P 		14.9
(-2)
P 		14
avr 22.3
(3) 		20.2
(1.5) 		17.9
(-0.1) 		17.5
(-0.4) 		13.9
(-3) 		17.9
(-0.1) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182890_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7555
Sequence Type Exemplar sequence
Representative Public ID R01H10.5 NCBI
Target Description R01H10.5 /REP_DB=WormBase Gene ID /WP=CE20023 /TR=Q21621 /GB=CAA83464.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066870(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066870 NCBI Caenorhabditis elegans R01H10.5 (R01H10.5) mRNA, complete cds. 11/11 None
SNAP00000005990 ENSEMBL cdna:SNAP chromosome:CEL140:III:10249184:10258625:-1 11/11 None
GENEFINDER00000005999 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10257103:10258625:-1 11/11 None
R01H10.5 ENSEMBL cdna:known chromosome:CEL140:III:10257103:10258625:-1 gene:R01H10.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10257098-10258621(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R01H10.5
Entrez Gene 187515 Entrez gene
SwissProt Q21621 EMBL-EBI
WormBase CE20023 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA83464 Hypothetical protein R01H10.5 [Caenorhabditis elegans] ref|NP_499271.1| R01H10.5 [Caenorhabditis elegans] 1.0E-117
blast CAA83464 Hypothetical protein R01H10.5 [Caenorhabditis elegans] ref|NP_499271.1| R01H10.5 [Caenorhabditis elegans] 1.0E-107
blast CAE56178 Hypothetical protein CBG23798 [Caenorhabditis briggsae] 6.0E-67
blast CAE56178 Hypothetical protein CBG23798 [Caenorhabditis briggsae] 3.0E-63
Sequence
Target Sequence 
>C. ELEGANS:182890_AT
agaatcgtgcaattccctaacggtagtttttactgattccccgaaaatcgatgatcacct
atttgccaaggcaatccgctgggcggaccagaatccggatgatacgattttctgggcgag
acggaaagcgttggagagaatccctgaaatcgacgtggagttctcgatgaaagctggcgc
tctgcgaagaattcgctttggttacagttccaagaagcttctgcaaggatgtatcgacat
agcgctcaaagcaagcatcggctctgaagtcgcagcgattttctgctcaatgagcatccc
gcaggactgcccggaactcggttgccttctcgccgcactcgccaatttttgtaatgtaga
tgacggccgcgcggtcgtcgtgattgatttgagagatgataatgatgatgagaagcagga
aggagttgaggaatctgatccatttgagaatgcgaattttctggaggaagaaatcgtgga
aaatccaaaggaattgagtaatgagcctcgcgaaactcaaactcaagaagaattcctgga
aaagctcaagcgagtcgcatcaatctacacaaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAATCGTGCAATTCCCTAACGGTA 478 71 18 Antisense
AATCGATGATCACCTATTTGCCAAG 443 167 63 Antisense
TCCGCTGGGCGGACCAGAATCCGGA 293 595 92 Antisense
CTCGATGAAAGCTGGCGCTCTGCGA 369 229 180 Antisense
GATGTATCGACATAGCGCTCAAAGC 634 409 245 Antisense
CAAGCATCGGCTCTGAAGTCGCAGC 621 185 269 Antisense
AAGTCGCAGCGATTTTCTGCTCAAT 596 157 284 Antisense
CTGCTCAATGAGCATCCCGCAGGAC 34 239 300 Antisense
GCGCGGTCGTCGTGATTGATTTGAG 446 285 386 Antisense
GAGCCTCGCGAAACTCAAACTCAAG 651 385 520 Antisense
GCGAGTCGCATCAATCTACACAAAG 110 291 567 Antisense
Sequence Source Affymetrix Proprietary Database