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[182888_at]

Description F31F7.3 /REP_DB=WormBase Gene ID /WP=CE09841 /TR=O01544 /GB=AAB52324.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 44      4grp_total > 11      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 71.9
(-1.9)
A 		127.4
(2.8)
A 		58.6
(-3)
A 		129.3
(3)
A 		71
B 84.3
(-0.4)
A 		56.1
(-3)
A 		120
(3)
A 		100.8
(1.2)
A 		64
C 106.1
(3)
A 		73.8
(-1.7)
A 		64.6
(-3)
A 		95.6
(1.5)
A 		42
avr 87.4
(-1.6) 		85.8
(-2) 		81.1
(-3) 		108.6
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 73.7
(0.8)
A 		90.8
(3)
A 		76.3
(1.1)
A 		67.1
(-0.1)
A 		45
(-3)
A 		79.7
(1.5)
A 		46
B 74.9
(0.3)
A 		104.7
(2.8)
A 		107.6
(3)
A 		35.5
(-3)
A 		93.2
(1.8)
A 		53.2
(-1.5)
A 		72
C 103.8
(3)
A 		86.4
(-0.9)
A 		95.9
(1.2)
A 		77.3
(-3)
A 		85.1
(-1.2)
A 		93.1
(0.6)
A 		27
avr 84.1
(1.3) 		94
(3) 		93.3
(2.9) 		60
(-3) 		74.4
(-0.5) 		75.3
(-0.3) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 26.2
(2.3)
A 		27.7
(3)
A 		15.3
(-3)
A 		18.9
(-1.3)
A 		12
B 26.9
(2.6)
A 		13.9
(-3)
A 		27.8
(3)
A 		21.5
(0.3)
A 		14
C 35.1
(3)
A 		21.2
(-1.4)
A 		22.5
(-1)
A 		16.1
(-3)
A 		19
avr 29.4
(3) 		20.9
(-1.8) 		21.9
(-1.2) 		18.8
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 13.6
(-3)
A 		32.3
(3)
A 		16.6
(-2)
A 		17
(-1.9)
A 		13.6
(-3)
A 		19.4
(-1.1)
A 		19
B 26
(0.5)
A 		34.8
(2.3)
A 		26.1
(0.5)
A 		9.4
(-3)
A 		37.9
(3)
A 		19.8
(-0.8)
A 		29
C 38.5
(3)
A 		26.4
(-0.2)
A 		24.4
(-0.7)
A 		15.6
(-3)
A 		27.5
(0.1)
A 		31.2
(1.1)
A 		23
avr 26
(1.2) 		31.2
(3) 		22.4
(-0.1) 		14
(-3) 		26.3
(1.3) 		23.5
(0.3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182888_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11810
Sequence Type Exemplar sequence
Representative Public ID F31F7.3 NCBI
Target Description F31F7.3 /REP_DB=WormBase Gene ID /WP=CE09841 /TR=O01544 /GB=AAB52324.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072200(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072200 NCBI Caenorhabditis elegans F31F7.3 (F31F7.3) mRNA, complete cds. 11/11 None
F31F7.3 ENSEMBL cdna:known chromosome:CEL140:V:6271159:6273075:-1 gene:F31F7.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6271158-6273075(-) 93.9 100.0
Public Domain and Genome References
Gene Title
Ensembl F31F7.3
Entrez Gene 185180 Entrez gene
SwissProt O01544 EMBL-EBI
WormBase CE09841 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52324 Hypothetical protein F31F7.3 [Caenorhabditis elegans] ref|NP_504601.1| F31F7.3 [Caenorhabditis elegans] 6.0E-65
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504601.1 1 12-31
F31F7.3 1 12-31
Sequence
Target Sequence 
>C. ELEGANS:182888_AT
gagaacatctgtccacgcaatatttatcacttccccctccttctcatcgttttcttcctt
cttcctgacaatttcatccgtccggcaaaccacttcaccgcgtctcccgaccggtgcctt
gtgaccagttcttctttctacgagcaactgctcattgctggagttttggaagagagagag
agatgctctcactgtctcttcctctttctgcacaatttgcgcacttatgaaagcaacttc
tttgcagataagtatgtagacatttgtttttttcttccaaagtgccgctgtagcccagat
tcaatttcaacttctttttctttattctcttcttcttcttctctcgtttactcgtctcct
cacaccaccgaatccttcggaaaacgaaacgagggtgacggcgatgatggcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAACATCTGTCCACGCAATATTT 261 393 28 Antisense
TTCTTCCTGACAATTTCATCCGTCC 250 689 86 Antisense
TGACAATTTCATCCGTCCGGCAAAC 79 573 93 Antisense
GTTCTTCTTTCTACGAGCAACTGCT 536 443 155 Antisense
GCAACTGCTCATTGCTGGAGTTTTG 330 319 171 Antisense
CTTCCTCTTTCTGCACAATTTGCGC 607 219 225 Antisense
TGTTTTTTTCTTCCAAAGTGCCGCT 553 559 292 Antisense
GCCGCTGTAGCCCAGATTCAATTTC 341 285 311 Antisense
TTCAACTTCTTTTTCTTTATTCTCT 36 687 333 Antisense
CTCACACCACCGAATCCTTCGGAAA 486 227 386 Antisense
ACGAGGGTGACGGCGATGATGGCGA 327 91 416 Antisense
Sequence Source Affymetrix Proprietary Database