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[182887_at]

Description F33D4.5 /REP_DB=WormBase Gene ID /WP=CE17035 /TR=O44187 /GB=AAB88377.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 46      6grp_high1_10_10 > 64      4grp_highest_8_8 > 29      4grp_high_8_8 > 07      6grp_highest_nonorm > 65      6grp_total > 64      4grp_total > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 745
1 2 3 4 range
A 1075.3
(-0.7)
P 		858.9
(-3)
P 		1011.8
(-1.4)
P 		1415.5
(3)
P 		557
B 1012.4
(-3)
P 		1021.4
(-2.9)
P 		1123.9
(-1.9)
P 		1603.5
(3)
P 		591
C 1184.1
(1.8)
P 		982.4
(-3)
P 		1235.6
(3)
P 		1065.5
(-1)
P 		253
avr 1090.6
(-1) 		954.2
(-3) 		1123.8
(-0.5) 		1361.5
(3) 		407

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1265
1 2 3 4 5 6 range
A 922.2
(-1)
P 		1091.1
(0.4)
P 		1404.4
(3)
P 		1241.7
(1.6)
P 		689.8
(-3)
P 		825.2
(-1.9)
P 		715
B 952.8
(-2.4)
P 		1121.1
(-1.4)
P 		1875.8
(3)
P 		1178.7
(-1)
P 		842.7
(-3)
P 		1394.3
(0.2)
P 		1033
C 840.1
(-1.4)
P 		1159.7
(0.9)
P 		1254.6
(1.5)
P 		1407.7
(2.6)
P 		611.2
(-3)
P 		1463.6
(3)
P 		852
avr 905
(-1.6) 		1124
(0.1) 		1511.6
(3) 		1276
(1.2) 		714.6
(-3) 		1227.7
(0.9) 		797
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 251
1 2 3 4 range
A 391.5
(3)
P 		186.4
(-3)
P 		264.5
(-0.7)
P 		207.2
(-2.4)
P 		205
B 322.8
(1.7)
P 		252.3
(-3)
P 		260.4
(-2.5)
P 		341.7
(3)
P 		89
C 392
(2.1)
P 		282.5
(-0.5)
P 		430.7
(3)
P 		179.7
(-3)
P 		251
avr 368.8
(3) 		240.4
(-3) 		318.5
(0.6) 		242.9
(-2.9) 		128

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 350
1 2 3 4 5 6 range
A 170
(-3)
P 		388
(3)
P 		305.8
(0.7)
P 		314.9
(1)
P 		208.2
(-1.9)
P 		200.9
(-2.1)
P 		218
B 331.5
(-2.4)
P 		373.2
(-1.2)
P 		455.5
(1.1)
P 		312.2
(-3)
P 		342.4
(-2.1)
P 		519.9
(3)
P 		208
C 311.4
(-0.7)
P 		353.8
(0.2)
P 		319.3
(-0.5)
P 		283.1
(-1.2)
P 		197.8
(-3)
P 		489.9
(3)
P 		292
avr 271
(-2.2) 		371.7
(1.8) 		360.2
(1.3) 		303.4
(-0.9) 		249.5
(-3) 		403.6
(3) 		154
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182887_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9495
Sequence Type Exemplar sequence
Representative Public ID F33D4.5 NCBI
Target Description F33D4.5 /REP_DB=WormBase Gene ID /WP=CE17035 /TR=O44187 /GB=AAB88377.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068856(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068856 NCBI Caenorhabditis elegans F33D4.5 (F33D4.5) mRNA, complete cds. 11/11 None
SNAP00000032724 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7707668:7709067:-1 11/11 None
GENEFINDER00000032730 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7707668:7709067:-1 11/11 None
F33D4.5.2 ENSEMBL cdna:known chromosome:CEL140:IV:7707575:7709685:-1 gene:F33D4.5 11/11 None
F33D4.5.1 ENSEMBL cdna:known chromosome:CEL140:IV:7707575:7709068:-1 gene:F33D4.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7707673-7709718(-) 96.01 100.0
Public Domain and Genome References
Gene Title
Ensembl F33D4.5
Entrez Gene 177549 Entrez gene
SwissProt Q7KPW7 EMBL-EBI
WormBase CE29308 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1605861_S_AT similar to mitochondrial ribosomal protein L1 cfa
CANINE:1601593_S_AT similar to mitochondrial ribosomal protein L1 cfa
CANINE:1595177_AT similar to mitochondrial ribosomal protein L1 cfa
CANINE_2:CFA.2420.1.S1_AT similar to mitochondrial ribosomal protein L1 cfa
CANINE_2:CFAAFFX.13790.1.S1_S_AT similar to mitochondrial ribosomal protein L1 cfa
DROSOPHILA_2:1628481_AT mitochondrial ribosomal protein L1 dm
DROSGENOME1:154580_AT mitochondrial ribosomal protein L1 dm
CHICKEN:GGA.5877.1.S1_AT similar to mitochondrial ribosomal protein L1 (L1mt) gga
HG-U133_PLUS_2:223154_AT mitochondrial ribosomal protein L1 hs
HG-U133B:223154_AT mitochondrial ribosomal protein L1 hs
HU35KSUBB:RC_R84421_AT mitochondrial ribosomal protein L1 hs
U133_X3P:G9437516_3P_AT mitochondrial ribosomal protein L1 hs
MG-U74BV2:111893_AT mitochondrial ribosomal protein L1 mm
MOUSE430A_2:1450948_A_AT mitochondrial ribosomal protein L1 mm
MOE430A:1450948_A_AT mitochondrial ribosomal protein L1 mm
MOUSE430_2:1450948_A_AT mitochondrial ribosomal protein L1 mm
MG-U74BV2:114851_AT mitochondrial ribosomal protein L1 mm
MOE430A:1423351_AT mitochondrial ribosomal protein L1 mm
MOUSE430A_2:1423351_AT mitochondrial ribosomal protein L1 mm
MOUSE430_2:1423351_AT mitochondrial ribosomal protein L1 mm
MOE430A:1460508_AT mitochondrial ribosomal protein L1 mm
MOUSE430A_2:1460508_AT mitochondrial ribosomal protein L1 mm
MOUSE430_2:1460508_AT mitochondrial ribosomal protein L1 mm
MU19KSUBB:TC32569_AT Mitochondrial ribosomal protein L1, mRNA (cDNA clone IMAGE:964045) mm
MU19KSUBC:TC35087_AT Mitochondrial ribosomal protein L1, mRNA (cDNA clone IMAGE:964045) mm
RG-U34C:RC_AI176979_AT mitochondrial ribosomal protein L1 (predicted) rn
RAE230A:1389125_AT mitochondrial ribosomal protein L1 (predicted) rn
RAT230_2:1389125_AT mitochondrial ribosomal protein L1 (predicted) rn
RG-U34C:RC_AA818414_AT Mitochondrial ribosomal protein L1 (predicted) rn
RG-U34C:RC_AI180110_AT Mitochondrial ribosomal protein L1 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAR85905 Hypothetical protein F33D4.5 [Caenorhabditis elegans] ref|NP_501257.1| F33D4.5 [Caenorhabditis elegans] 1.0E-169
blast CAE61943 Hypothetical protein CBG05941 [Caenorhabditis briggsae] 1.0E-160
Sequence
Target Sequence 
>C. ELEGANS:182887_AT
tcaagggacagttcaggacggacgattatgatttctgtgtatctcattcagatatgggat
catcgattcttccactacgtggaattcttaaaatgagattcccaacaagagctaatggag
gtctcggagaaaatcttccagagcttatcgaaaaattcaagaacggagtgaaacttaata
tcaaaggagatcctgtatatcccatttgggggctcagtgattgcgttgttggacggttat
caatgccaaatgaacatattgaagccaatatcgcaactgtaattgcagccgcatgtgctc
atcgtaatcctgcacttggttcatttgtcaatcgagcacttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAGGGACAGTTCAGGACGGACGA 178 319 674 Antisense
GGACGGACGATTATGATTTCTGTGT 703 523 689 Antisense
ATGGGATCATCGATTCTTCCACTAC 697 49 727 Antisense
GGTCTCGGAGAAAATCTTCCAGAGC 232 503 793 Antisense
GGAGATCCTGTATATCCCATTTGGG 281 519 859 Antisense
CCCATTTGGGGGCTCAGTGATTGCG 123 257 874 Antisense
GCGTTGTTGGACGGTTATCAATGCC 488 291 896 Antisense
ACTGTAATTGCAGCCGCATGTGCTC 245 97 949 Antisense
GCATGTGCTCATCGTAATCCTGCAC 350 311 964 Antisense
TAATCCTGCACTTGGTTCATTTGTC 666 635 978 Antisense
GGTTCATTTGTCAATCGAGCACTTT 331 507 991 Antisense
Sequence Source Affymetrix Proprietary Database