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[182886_at]

Description W07B8.3 /REP_DB=WormBase Gene ID /WP=CE28510 /TR=O16286 /GB=AAB65347.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 15      4grp_total > 54      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 349
1 2 3 4 range
A 505.3
(3)
P 		314.9
(-0.9)
M 		235.7
(-2.5)
M 		212.7
(-3)
A 		293
B 557.1
(3)
P 		314.2
(-1.2)
A 		283.1
(-1.7)
M 		209.2
(-3)
A 		348
C 543.3
(3)
P 		371.1
(-0.1)
A 		219.2
(-2.8)
M 		208.4
(-3)
A 		335
avr 535.2
(3) 		333.4
(-0.7) 		246
(-2.3) 		210.1
(-3) 		325

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 319
1 2 3 4 5 6 range
A 306.6
(0.7)
A 		413.5
(3)
P 		241.1
(-0.6)
P 		187.5
(-1.8)
A 		148.1
(-2.6)
A 		130
(-3)
A 		284
B 381.7
(3)
P 		366.7
(2.7)
P 		247.8
(0.2)
P 		188.5
(-1)
P 		194.4
(-0.9)
M 		95.3
(-3)
A 		286
C 413.8
(3)
P 		312.2
(0.9)
P 		237.1
(-0.7)
A 		136.4
(-2.8)
A 		167.6
(-2.2)
A 		128.3
(-3)
A 		286
avr 367.4
(3) 		364.1
(2.9) 		242
(-0) 		170.8
(-1.7) 		170
(-1.7) 		117.9
(-3) 		250
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 153
1 2 3 4 range
A 184
(3)
P 		68.4
(-1.5)
M 		61.6
(-1.8)
M 		31.1
(-3)
A 		153
B 177.7
(3)
P 		77.6
(-1.5)
A 		65.6
(-2.1)
M 		44.6
(-3)
A 		133
C 179.8
(3)
P 		106.7
(-0)
A 		76.4
(-1.3)
M 		35.1
(-3)
A 		145
avr 180.5
(3) 		84.2
(-1) 		67.9
(-1.7) 		36.9
(-3) 		144

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 126
1 2 3 4 5 6 range
A 56.5
(-1.7)
A 		147.1
(3)
P 		52.5
(-1.9)
P 		47.6
(-2.2)
A 		44.7
(-2.3)
A 		31.7
(-3)
A 		115
B 132.8
(3)
P 		122
(2.3)
P 		60.2
(-1.5)
P 		49.9
(-2.1)
P 		79
(-0.3)
M 		35.5
(-3)
A 		97
C 153.4
(3)
P 		95.3
(0.2)
P 		60.3
(-1.4)
A 		27.4
(-3)
A 		54.2
(-1.7)
A 		42.9
(-2.3)
A 		126
avr 114.2
(2.5) 		121.5
(3) 		57.7
(-1.5) 		41.6
(-2.7) 		59.3
(-1.4) 		36.7
(-3) 		85
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182886_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15891
Sequence Type Exemplar sequence
Representative Public ID W07B8.3 NCBI
Target Description W07B8.3 /REP_DB=WormBase Gene ID /WP=CE28510 /TR=O16286 /GB=AAB65347.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070980(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070980 NCBI Caenorhabditis elegans W07B8.3 (W07B8.3) mRNA, complete cds. 10/11 A 
SNAP00000016191 ENSEMBL cdna:SNAP chromosome:CEL140:V:1121882:1123591:1 10/11 None
GENEFINDER00000016198 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1121882:1128940:1 10/11 None
W07B8.3 ENSEMBL cdna:known chromosome:CEL140:V:1121882:1129122:1 gene:W07B8.3 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1121881-1124662(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W07B8.3
Entrez Gene 178610 Entrez gene
SwissProt O16286 EMBL-EBI
WormBase CE28510 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65347 Hypothetical protein W07B8.3 [Caenorhabditis elegans] ref|NP_503381.1| W07B8.3 [Caenorhabditis elegans] 1.0E-111
blast CAE58031 Hypothetical protein CBG01105 [Caenorhabditis briggsae] 1.0E-103
blast AAB65347 Hypothetical protein W07B8.3 [Caenorhabditis elegans] ref|NP_503381.1| W07B8.3 [Caenorhabditis elegans] 3.0E-50
blast CAE58031 Hypothetical protein CBG01105 [Caenorhabditis briggsae] 5.0E-48
Sequence
Target Sequence 
>C. ELEGANS:182886_AT
cgctttgaggttttcggactacgagatggaatatgccgatttgtatgatgcgctgctcaa
aaaagtgcacgaagtgcgcgcggatttcgaaggagacctcgcattcatcgaccagtacgg
ccgtcaagtgatagtctcgtctgacaaggacgtccgagaggcgatccaacaatcgaaaaa
caagctgaagctgcatacgactctccgcgacggacacgtcatcgccgcagctgatatggc
cgaagcagcacgcggacggccagccagatcacagtccgtgccgccggtcacatctcaaaa
aactcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCTTTGAGGTTTTCGGACTACGAG 226 249 63 Antisense
TGCCGATTTGTATGATGCGCTGCTC 613 583 96 Antisense
AGTGCGCGCGGATTTCGAAGGAGAC 210 61 135 Antisense
CGAAGGAGACCTCGCATTCATCGAC 61 253 150 Antisense
TCGACCAGTACGGCCGTCAAGTGAT 434 599 170 Antisense
GTCTCGTCTGACAAGGACGTCCGAG 133 469 196 Antisense
ACGTCCGAGAGGCGATCCAACAATC 174 95 212 Antisense
AAGCTGAAGCTGCATACGACTCTCC 131 151 244 Antisense
TCATCGCCGCAGCTGATATGGCCGA 509 619 281 Antisense
GATATGGCCGAAGCAGCACGCGGAC 296 425 295 Antisense
GCCGGTCACATCTCAAAAAACTCAC 466 283 345 Antisense
Sequence Source Affymetrix Proprietary Database