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[182885_at]

Description F52G3.3 /REP_DB=WormBase Gene ID /WP=CE10858 /TR=Q9GZI2 /GB=AAF99971.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 36      4grp_total > 04      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 33.5
(-1.4)
A 		20.5
(-2.3)
A 		8.9
(-3)
A 		103.3
(3)
A 		94
B 46
(3)
A 		6.7
(-3)
A 		21.2
(-0.8)
A 		28.5
(0.3)
A 		39
C 16.6
(-2.5)
A 		8.1
(-3)
A 		19.7
(-2.4)
A 		121.1
(3)
A 		113
avr 32
(-1.3) 		11.8
(-3) 		16.6
(-2.6) 		84.3
(3) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 97.6
(3)
A 		15.5
(-2.6)
A 		41.8
(-0.8)
A 		9.8
(-3)
A 		17.7
(-2.5)
A 		22.7
(-2.1)
A 		88
B 28.3
(0.4)
A 		46.5
(3)
A 		6.5
(-2.8)
A 		40.7
(2.2)
A 		5.2
(-3)
A 		20.5
(-0.8)
A 		41
C 12.2
(-2.8)
A 		76.9
(3)
A 		10.2
(-3)
A 		30.6
(-1.2)
A 		10.6
(-3)
A 		46.9
(0.3)
A 		67
avr 46
(2.9) 		46.3
(3) 		19.5
(-1.6) 		27
(-0.3) 		11.2
(-3) 		30
(0.2) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 12.2
(1.6)
A 		4.4
(-2)
A 		2.3
(-3)
A 		15.1
(3)
A 		13
B 14.7
(3)
A 		1.6
(-3)
A 		4.9
(-1.5)
A 		6.1
(-0.9)
A 		13
C 5.5
(-1.9)
A 		2.3
(-3)
A 		6.9
(-1.5)
A 		20.4
(3)
A 		18
avr 10.8
(1.3) 		2.8
(-3) 		4.7
(-2) 		13.9
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 18
(3)
A 		5.5
(-1.8)
A 		9.1
(-0.4)
A 		2.5
(-3)
A 		5.3
(-1.9)
A 		5.5
(-1.8)
A 		16
B 9.8
(0.5)
A 		15.5
(3)
A 		1.6
(-3)
A 		10.8
(1)
A 		2.1
(-2.8)
A 		7.6
(-0.4)
A 		14
C 4.5
(-2.5)
A 		23.5
(3)
A 		2.6
(-3)
A 		6.1
(-2)
A 		3.4
(-2.8)
A 		15.7
(0.8)
A 		21
avr 10.8
(0.9) 		14.8
(3) 		4.4
(-2.6) 		6.5
(-1.4) 		3.6
(-3) 		9.6
(0.2) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182885_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17981
Sequence Type Exemplar sequence
Representative Public ID F52G3.3 NCBI
Target Description F52G3.3 /REP_DB=WormBase Gene ID /WP=CE10858 /TR=Q9GZI2 /GB=AAF99971.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078341(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078341 NCBI Caenorhabditis elegans F52G3.3 (F52G3.3) mRNA, complete cds. 11/11 None
GENEFINDER00000042488 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16943820:16946311:-1 11/11 None
F52G3.3 ENSEMBL cdna:known chromosome:CEL140:X:16944790:16947939:-1 gene:F52G3.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000042477 3/11 Cross Hyb Matching Probes None
SNAP00000042478 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16944789-16947939(-) 95.67 100.0
Public Domain and Genome References
Gene Title
Ensembl F52G3.3
Entrez Gene 186129 Entrez gene
SwissProt Q9GZI2 EMBL-EBI
WormBase CE10858 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF99971 Hypothetical protein F52G3.3 [Caenorhabditis elegans] ref|NP_510742.1| F52G3.3 [Caenorhabditis elegans] 0.0
blast AAF99971 Hypothetical protein F52G3.3 [Caenorhabditis elegans] ref|NP_510742.1| F52G3.3 [Caenorhabditis elegans] 1.0E-127
blast NP_921821 putative helicase [Oryza sativa (japonica cultivar-group)] gb|AAP54108.1| putative helicase [Oryza sativa (japonica cultivar-group)] gb|AAK54302.1| putative helicase [Oryza sativa (japonica cultivar-group)] 2.0E-25
blast NP_178583 hypothetical protein [Arabidopsis thaliana] 6.0E-25
blast AAK68324 Hypothetical protein F14H12.2 [Caenorhabditis elegans] ref|NP_508746.1| F14H12.2 [Caenorhabditis elegans] 5.0E-14
Sequence
Target Sequence 
>C. ELEGANS:182885_AT
cgtcatcttttgcccaatcggggatatcacgctggtcaacaaaatgtttcagaagctttc
aatgttttgagagagaaatatctgggattggtgatgcaccagagcggaacactgcaagaa
acagtcgatttcactcatggattgggaacaactctaaccaagtacaccatttgcggaaaa
ggaaatcttgtgaaatcgatgtctatggaatctgctcactatctcttcgttccagttttc
catgacaacaaatccgagttcaaagatttcaattcgaacgaagcagtcgaacttctttct
tccaaatattatctgaaagctttcactgaattcacaggaacggatggtaatggacactat
gtatcatggatcaagcaatctgataacagctggaaatgcatcaacgtaaatggaacagac
tgcggatcaagagaaaatggacgaaatcatcctcatggacacatcagatcaaacagatgc
ccatcccgctcaacaaaaagag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTCATCTTTTGCCCAATCGGGGAT 661 243 1882 Antisense
CAATCGGGGATATCACGCTGGTCAA 620 179 1896 Antisense
GTGATGCACCAGAGCGGAACACTGC 526 483 1972 Antisense
AAACAGTCGATTTCACTCATGGATT 200 127 2000 Antisense
GGAACAACTCTAACCAAGTACACCA 642 133 2026 Antisense
TATGGAATCTGCTCACTATCTCTTC 581 655 2085 Antisense
CTTCGTTCCAGTTTTCCATGACAAC 68 221 2106 Antisense
GAAGCAGTCGAACTTCTTTCTTCCA 180 341 2161 Antisense
GAAATCATCCTCATGGACACATCAG 75 363 2324 Antisense
TCAGATCAAACAGATGCCCATCCCG 620 623 2345 Antisense
TGCCCATCCCGCTCAACAAAAAGAG 320 583 2359 Antisense
Sequence Source Affymetrix Proprietary Database