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[182884_at]

Description C09F12.2 /REP_DB=WormBase Gene ID /WP=CE08041 /TR=Q93199 /GB=CAB01720.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 09      6grp_total > 90      4grp_total > 54      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 674
1 2 3 4 range
A 684.5
(3)
P 		217.4
(-1.4)
P 		189.4
(-1.7)
P 		47.5
(-3)
A 		637
B 715.5
(3)
P 		304.7
(-0.7)
P 		225.1
(-1.4)
P 		41.7
(-3)
A 		674
C 509.9
(3)
P 		274.6
(-0.2)
P 		207.8
(-1.1)
P 		63.3
(-3)
A 		447
avr 636.6
(3) 		265.6
(-0.8) 		207.4
(-1.4) 		50.8
(-3) 		586

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 266
1 2 3 4 5 6 range
A 223.2
(0.7)
P 		200.3
(0.1)
P 		136.5
(-1.8)
A 		299.4
(3)
P 		239.4
(1.2)
P 		96.9
(-3)
P 		203
B 251.7
(1.5)
P 		176.7
(-0.4)
P 		92
(-2.6)
P 		309.2
(3)
P 		234
(1.1)
P 		76.6
(-3)
P 		233
C 317.6
(3)
P 		169.2
(-0.4)
P 		152.2
(-0.7)
P 		288.2
(2.3)
P 		213.7
(0.7)
P 		52.1
(-3)
A 		266
avr 264.2
(2.1) 		182.1
(-0.1) 		126.9
(-1.6) 		298.9
(3) 		229
(1.1) 		75.2
(-3) 		224
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 242
1 2 3 4 range
A 249.2
(3)
P 		47.2
(-2)
P 		49.5
(-1.9)
P 		7
(-3)
A 		242
B 228.2
(3)
P 		75.3
(-1.2)
P 		52.2
(-1.8)
P 		8.9
(-3)
A 		219
C 168.8
(3)
P 		79
(-0.4)
P 		72.4
(-0.7)
P 		10.7
(-3)
A 		158
avr 215.4
(3) 		67.2
(-1.3) 		58
(-1.6) 		8.9
(-3) 		207

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 41.1
(-1)
P 		71.2
(2.5)
P 		29.7
(-2.3)
A 		75.9
(3)
P 		72.2
(2.6)
P 		23.6
(-3)
P 		52
B 87.6
(2.4)
P 		58.8
(0)
P 		22.3
(-3)
P 		81.9
(1.9)
P 		95.1
(3)
P 		28.6
(-2.5)
P 		73
C 117.7
(3)
P 		51.6
(-1)
P 		38.7
(-1.7)
P 		57.9
(-0.6)
P 		69.1
(0.1)
P 		17.4
(-3)
A 		100
avr 82.1
(3) 		60.5
(0.8) 		30.2
(-2.3) 		71.9
(2) 		78.8
(2.7) 		23.2
(-3) 		59
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182884_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16053
Sequence Type Exemplar sequence
Representative Public ID C09F12.2 NCBI
Target Description C09F12.2 /REP_DB=WormBase Gene ID /WP=CE08041 /TR=Q93199 /GB=CAB01720.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077447(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077447 NCBI Caenorhabditis elegans C09F12.2 (C09F12.2) mRNA, complete cds. 11/11 None
SNAP00000018793 ENSEMBL cdna:SNAP chromosome:CEL140:X:11053905:11056721:1 11/11 None
GENEFINDER00000018798 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11053905:11056721:1 11/11 None
C09F12.2 ENSEMBL cdna:known chromosome:CEL140:X:11053866:11056892:1 gene:C09F12.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11055064-11056260(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C09F12.2
Entrez Gene 181294 Entrez gene
SwissProt Q93199 EMBL-EBI
WormBase CE31409 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01720 Hypothetical protein C09F12.2 [Caenorhabditis elegans] ref|NP_509848.2| C09F12.2 [Caenorhabditis elegans] 0.0
blast CAE70761 Hypothetical protein CBG17510 [Caenorhabditis briggsae] 0.0
blast EAA77950 hypothetical protein FG07756.1 [Gibberella zeae PH-1] ref|XP_387932.1| hypothetical protein FG07756.1 [Gibberella zeae PH-1] 1.0E-103
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509848.2 5 90-112,122-144,461-483,505-527,548-570
C09F12.2 5 90-112,122-144,461-483,505-527,548-570
SNAP00000018793 5 89-111,300-322,417-439,461-483,504-526
GENEFINDER00000018798 5 90-112,122-144,461-483,505-527,548-570
Sequence
Target Sequence 
>C. ELEGANS:182884_AT
gatcctatactgtctggcaatctccattgttttattgcatcaacttagaccaatcgccat
ttttcgtcagaataactggtcttctgcgagcatttttcatgatgggataccttattccat
ggaatatcaacaccatgagcattttctcactcacattgaagcttttcgaggagggagaat
acactcacccaggatatcaaatggacgatatcattgctctcattagatggtcattggctg
tgagaagaaaatgtgtgatcagagcgatccctgttgccaccttgtctggacccaccagcg
gaaagaactatatcgacgaatggtacgagtgggcacgacagatcagacgctggaccattg
gagctgctgaagtcttccattattttgccatcaaatttttccgtcttccggttacagttt
ctatttcattcgccgcaaaatttgtgttttactatgggtttcttctttgtattgcttcaa
tttacactttaatcgcgcctatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCCTATACTGTCTGGCAATCTCC 68 417 443 Antisense
TAGACCAATCGCCATTTTTCGTCAG 559 651 488 Antisense
ATAACTGGTCTTCTGCGAGCATTTT 308 25 514 Antisense
GGACGATATCATTGCTCTCATTAGA 235 523 645 Antisense
TGTGATCAGAGCGATCCCTGTTGCC 355 555 696 Antisense
GAGTGGGCACGACAGATCAGACGCT 536 401 769 Antisense
AGACGCTGGACCATTGGAGCTGCTG 273 71 787 Antisense
GAAGTCTTCCATTATTTTGCCATCA 97 337 811 Antisense
TTTGCCATCAAATTTTTCCGTCTTC 18 669 826 Antisense
GTTACAGTTTCTATTTCATTCGCCG 216 447 853 Antisense
AATTTACACTTTAATCGCGCCTATT 477 175 921 Antisense
Sequence Source Affymetrix Proprietary Database