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[182883_at]

Description F36A4.1 /REP_DB=WormBase Gene ID /WP=CE07177 /TR=Q20096 /GB=AAA96164.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 35      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 16.9
(-3)
A 		54.5
(2.6)
A 		57.1
(3)
A 		54.9
(2.7)
A 		40
B 32.6
(2)
A 		37.9
(3)
A 		7.4
(-3)
A 		27.7
(1)
A 		31
C 29
(2.1)
A 		31.2
(2.5)
A 		2.4
(-3)
A 		33.8
(3)
A 		31
avr 26.2
(-1.8) 		41.2
(3) 		22.3
(-3) 		38.8
(2.2) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 2.9
(-2.7)
A 		7
(-0.9)
A 		7.1
(-0.8)
A 		15.6
(3)
A 		2.3
(-3)
A 		6.8
(-1)
A 		13
B 9.9
(-1.8)
A 		43.6
(3)
A 		5.8
(-2.4)
A 		2.2
(-2.9)
A 		3.9
(-2.7)
A 		1.5
(-3)
A 		42
C 4.2
(-3)
A 		44.2
(3)
A 		23.6
(-0.1)
A 		7.2
(-2.6)
A 		9.3
(-2.2)
A 		8.9
(-2.3)
A 		40
avr 5.7
(-2.9) 		31.6
(3) 		12.2
(-1.4) 		8.3
(-2.3) 		5.2
(-3) 		5.7
(-2.9) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 6.2
(-3)
A 		11.8
(0.9)
A 		14.9
(3)
A 		8
(-1.8)
A 		9
B 10.4
(3)
A 		9.4
(2.3)
A 		1.7
(-3)
A 		5.9
(-0.1)
A 		9
C 9.6
(3)
A 		9
(2.6)
A 		0.8
(-3)
A 		5.7
(0.3)
A 		9
avr 8.7
(1) 		10.1
(3) 		5.8
(-3) 		6.5
(-2) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 0.5
(-3)
A 		2.5
(0.4)
A 		1.5
(-1.3)
A 		4
(3)
A 		0.7
(-2.7)
A 		1.7
(-0.9)
A 		4
B 3.5
(-1.7)
A 		14.5
(3)
A 		1.4
(-2.7)
A 		0.6
(-3)
A 		1.6
(-2.6)
A 		0.6
(-3)
A 		14
C 1.6
(-3)
A 		13.5
(3)
A 		6
(-0.8)
A 		1.5
(-3)
A 		3
(-2.3)
A 		3
(-2.3)
A 		12
avr 1.9
(-2.9) 		10.2
(3) 		3
(-2.1) 		2
(-2.9) 		1.8
(-3) 		1.8
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182883_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10402
Sequence Type Exemplar sequence
Representative Public ID F36A4.1 NCBI
Target Description F36A4.1 /REP_DB=WormBase Gene ID /WP=CE07177 /TR=Q20096 /GB=AAA96164.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068128(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068128 NCBI Caenorhabditis elegans F36A4.1 (F36A4.1) mRNA, complete cds. 11/11 None
GENEFINDER00000033280 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4271245:4272768:1 10/11 None
F36A4.1 ENSEMBL cdna:known chromosome:CEL140:IV:4272466:4272883:1 gene:F36A4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4272471-4272889(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F36A4.1
Entrez Gene 185338 Entrez gene
SwissProt Q20096 EMBL-EBI
WormBase CE07177 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA96163 Hypothetical protein F36A4.2 [Caenorhabditis elegans] ref|NP_500528.1| F36A4.2 [Caenorhabditis elegans] 9.0E-76
blast AAA96164 Hypothetical protein F36A4.1 [Caenorhabditis elegans] ref|NP_500529.1| F36A4.1 [Caenorhabditis elegans] 4.0E-57
blast AAA96164 Hypothetical protein F36A4.1 [Caenorhabditis elegans] ref|NP_500529.1| F36A4.1 [Caenorhabditis elegans] 5.0E-40
blast AAA96161 Hypothetical protein F36A4.4 [Caenorhabditis elegans] ref|NP_500526.1| F36A4.4 [Caenorhabditis elegans] 6.0E-35
blast AAA96163 Hypothetical protein F36A4.2 [Caenorhabditis elegans] ref|NP_500528.1| F36A4.2 [Caenorhabditis elegans] 7.0E-30
blast AAA96161 Hypothetical protein F36A4.4 [Caenorhabditis elegans] ref|NP_500526.1| F36A4.4 [Caenorhabditis elegans] 1.0E-28
Protein Domains
Database ID Description E-Value
Pfam IPR008588 EMBL-EBI Caenorhabditis elegans protein of unknown function DUF870 1.3E-31
Pfam IPR008588 EMBL-EBI Caenorhabditis elegans protein of unknown function DUF870 1.6E-75
Pfam IPR008588 EMBL-EBI Caenorhabditis elegans protein of unknown function DUF870 2.1E-27
Sequence
Target Sequence 
>C. ELEGANS:182883_AT
acaatttgcttggtcatcctatgctctctagccaacggaaagcttctctttgaagcagac
atcacctgcaatattcctggcgcacattggtgtggagaaatctatgttttggagaaaaat
ttgatcaaggacgacaagctgaaacatgagaaattttgcacgtcggaacgtacaaagtca
cttgagtacactatcgaccctactgactttcctatagaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAATTTGCTTGGTCATCCTATGCT 222 115 25 Antisense
TATGCTCTCTAGCCAACGGAAAGCT 573 657 44 Antisense
GCCAACGGAAAGCTTCTCTTTGAAG 574 277 55 Antisense
CAGACATCACCTGCAATATTCCTGG 183 205 80 Antisense
CAATATTCCTGGCGCACATTGGTGT 210 181 93 Antisense
TTCCTGGCGCACATTGGTGTGGAGA 6 701 98 Antisense
GATCAAGGACGACAAGCTGAAACAT 27 423 147 Antisense
TGAGAAATTTTGCACGTCGGAACGT 415 567 171 Antisense
GTCACTTGAGTACACTATCGACCCT 466 459 201 Antisense
TTGAGTACACTATCGACCCTACTGA 618 701 206 Antisense
GACCCTACTGACTTTCCTATAGAAA 356 381 220 Antisense
Sequence Source Affymetrix Proprietary Database