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[182881_at]

Description C03E10.6 /REP_DB=WormBase Gene ID /WP=CE15586 /TR=O62024 /GB=CAB03825.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 31      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 6.1
(-2.7)
A 		5.1
(-3)
A 		8.9
(-1.7)
A 		22.6
(3)
A 		18
B 10.9
(0.8)
A 		14.2
(3)
A 		12.1
(1.6)
A 		5.3
(-3)
A 		9
C 25.7
(3)
A 		1.1
(-2.9)
A 		0.8
(-3)
A 		4.5
(-2.1)
A 		25
avr 14.2
(3) 		6.8
(-3) 		7.3
(-2.6) 		10.8
(0.2) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 199
1 2 3 4 5 6 range
A 19.6
(-2.5)
A 		11.5
(-2.7)
A 		8.6
(-2.8)
A 		3.1
(-3)
A 		200.2
(3)
P 		108.9
(0.2)
P 		197
B 10.5
(-2.7)
A 		16.7
(-2.5)
A 		1.3
(-3)
A 		17.4
(-2.5)
A 		200.6
(3)
P 		158.3
(1.7)
P 		199
C 3.5
(-3)
A 		25.2
(-2.3)
A 		3.4
(-3)
A 		33.4
(-2.1)
A 		198.2
(3)
P 		114.4
(0.4)
P 		195
avr 11.2
(-2.8) 		17.8
(-2.6) 		4.4
(-3) 		18
(-2.6) 		199.7
(3) 		127.2
(0.8) 		195
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 2.2
(0)
A 		1.1
(-3)
A 		2.3
(0.3)
A 		3.3
(3)
A 		2
B 3.5
(3)
A 		3.5
(3)
A 		2.8
(1.3)
A 		1.1
(-3)
A 		2
C 8.5
(3)
A 		0.3
(-3)
A 		0.3
(-3)
A 		0.8
(-2.6)
A 		8
avr 4.7
(3) 		1.6
(-3) 		1.8
(-2.6) 		1.7
(-2.8) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 3.6
(-2.7)
A 		4.1
(-2.7)
A 		1.9
(-2.9)
A 		0.8
(-3)
A 		60.4
(3)
P 		26.5
(-0.4)
P 		60
B 3.6
(-2.8)
A 		5.5
(-2.6)
A 		0.3
(-3)
A 		4.6
(-2.7)
A 		81.5
(3)
P 		59
(1.3)
P 		81
C 1.3
(-3)
A 		7.7
(-2.4)
A 		0.9
(-3)
A 		6.7
(-2.4)
A 		64.1
(3)
P 		38.3
(0.6)
P 		63
avr 2.8
(-2.8) 		5.8
(-2.6) 		1
(-3) 		4
(-2.7) 		68.7
(3) 		41.3
(0.6) 		68
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182881_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14339
Sequence Type Exemplar sequence
Representative Public ID C03E10.6 NCBI
Target Description C03E10.6 /REP_DB=WormBase Gene ID /WP=CE15586 /TR=O62024 /GB=CAB03825.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073461(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073461 NCBI Caenorhabditis elegans C03E10.6 (C03E10.6) mRNA, complete cds. 11/11 None
GENEFINDER00000008163 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11272340:11279879:1 11/11 None
C03E10.6 ENSEMBL cdna:known chromosome:CEL140:V:11274534:11275005:1 gene:C03E10.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000008148 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11274560-11275005(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C03E10.6
Entrez Gene 179560 Entrez gene
SwissProt O62024 EMBL-EBI
WormBase CE15586 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03824 Hypothetical protein C03E10.5 [Caenorhabditis elegans] ref|NP_505863.1| C03E10.5 [Caenorhabditis elegans] 0.0
blast CAE75209 Hypothetical protein CBG23156 [Caenorhabditis briggsae] 1.0E-166
blast CAB03825 Hypothetical protein C03E10.6 [Caenorhabditis elegans] ref|NP_505862.1| C03E10.6 [Caenorhabditis elegans] 3.0E-55
blast CAB03826 Hypothetical protein F07B10.3 [Caenorhabditis elegans] emb|CAB01142.2| Hypothetical protein F07B10.3 [Caenorhabditis elegans] ref|NP_505861.2| Seven TM Receptor family member (str-115) [Caenorhabditis elegans] 7.0E-53
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 8.1E-21
Pfam IPR008160 EMBL-EBI Collagen triple helix repeat 3.8E-4
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000008163 4 24-46,67-89,109-131,138-155
Sequence
Target Sequence 
>C. ELEGANS:182881_AT
ataagacaaccagagtgcactagtatcaatggtaatcaatggactgatggtgtaacaaac
gggaaaaacttttttgaaagcccaggattctttgcgcaacaacagcctagcccaggatct
ggaacaaaaatgtgttttggcatttggacagcaactaagaaactgtattcatacaaatgt
actgaatctgacaccaacaaaccagcaaaactca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATAAGACAACCAGAGTGCACTAGTA 418 23 61 Antisense
GAGTGCACTAGTATCAATGGTAATC 418 401 73 Antisense
GTATCAATGGTAATCAATGGACTGA 126 453 83 Antisense
AATGGACTGATGGTGTAACAAACGG 88 161 98 Antisense
TGAAAGCCCAGGATTCTTTGCGCAA 42 573 135 Antisense
CAACAGCCTAGCCCAGGATCTGGAA 641 187 160 Antisense
GCCTAGCCCAGGATCTGGAACAAAA 227 277 165 Antisense
GTGTTTTGGCATTTGGACAGCAACT 670 485 192 Antisense
GCAACTAAGAAACTGTATTCATACA 259 319 211 Antisense
GTACTGAATCTGACACCAACAAACC 441 459 239 Antisense
GACACCAACAAACCAGCAAAACTCA 478 367 250 Antisense
Sequence Source Affymetrix Proprietary Database