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[182880_at]

Description ZK1067.3 /REP_DB=WormBase Gene ID /WP=CE06678 /TR=Q23389 /GB=CAA93885.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 88      4grp_highest_8_8 > 34      4grp_high_8_8 > 58      6grp_highest_nonorm > 95      6grp_total > 87      4grp_total > 61      6grp_highest_sub > In      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 319
1 2 3 4 range
A 594.4
(1.8)
P 		638.9
(3)
P 		572.2
(1.3)
P 		409.9
(-3)
P 		229
B 617.5
(3)
P 		397.9
(-3)
P 		563.8
(1.5)
P 		425.7
(-2.2)
P 		220
C 564.6
(3)
P 		451.7
(0.2)
P 		552.7
(2.7)
P 		319.6
(-3)
P 		245
avr 592.2
(3) 		496.2
(0.2) 		562.9
(2.2) 		385.1
(-3) 		207

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 858
1 2 3 4 5 6 range
A 397.2
(-3)
P 		456.9
(-2.2)
P 		453.4
(-2.2)
P 		522.5
(-1.3)
P 		728.8
(1.6)
P 		831.8
(3)
P 		435
B 503
(-3)
P 		536.9
(-2.7)
P 		547
(-2.6)
P 		622.3
(-2)
P 		684.5
(-1.6)
P 		1255
(3)
P 		752
C 469.6
(-2.5)
P 		538.4
(-2)
P 		541.2
(-2)
P 		399.9
(-3)
P 		722
(-0.7)
P 		1225.3
(3)
P 		825
avr 456.6
(-3) 		510.7
(-2.5) 		513.9
(-2.5) 		514.9
(-2.5) 		711.8
(-0.6) 		1104
(3) 		647
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 163
1 2 3 4 range
A 216.4
(3)
P 		138.7
(0)
P 		149.6
(0.4)
P 		60
(-3)
P 		156
B 196.9
(3)
P 		98.3
(-2.6)
P 		130.6
(-0.7)
P 		90.7
(-3)
P 		106
C 186.9
(2.8)
P 		129.9
(0.3)
P 		192.6
(3)
P 		53.9
(-3)
P 		139
avr 200.1
(3) 		122.3
(-0.5) 		157.6
(1.1) 		68.2
(-3) 		132

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 395
1 2 3 4 5 6 range
A 73.2
(-3)
P 		162.5
(0.7)
P 		98.7
(-2)
P 		132.5
(-0.6)
P 		219.9
(3)
P 		202.5
(2.3)
P 		147
B 175
(-2.2)
P 		178.7
(-2.2)
P 		132.8
(-3)
P 		164.8
(-2.4)
P 		278.1
(-0.4)
P 		468
(3)
P 		335
C 174.1
(-1.3)
P 		164.3
(-1.5)
P 		137.7
(-2)
P 		80.4
(-3)
P 		233.6
(-0.2)
P 		410.2
(3)
P 		330
avr 140.8
(-2.6) 		168.5
(-1.9) 		123.1
(-3) 		125.9
(-2.9) 		243.9
(0.1) 		360.2
(3) 		237
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182880_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3887
Sequence Type Exemplar sequence
Representative Public ID ZK1067.3 NCBI
Target Description ZK1067.3 /REP_DB=WormBase Gene ID /WP=CE06678 /TR=Q23389 /GB=CAA93885.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063564(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063564 NCBI Caenorhabditis elegans ZK1067.3 (ZK1067.3) mRNA, complete cds. 10/11 None
SNAP00000014742 ENSEMBL cdna:SNAP chromosome:CEL140:II:9223186:9225000:1 10/11 None
GENEFINDER00000014747 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9223186:9225000:1 10/11 None
ZK1067.3 ENSEMBL cdna:known chromosome:CEL140:II:9223180:9225053:1 gene:ZK1067.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9223182-9225044(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1067.3
Entrez Gene 191516 Entrez gene
SwissProt Q23389 EMBL-EBI
WormBase CE33012 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93885 Hypothetical protein ZK1067.3 [Caenorhabditis elegans] ref|NP_495965.2| ZK1067.3 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:182880_AT
ggaggcgcgagagtcagctgaagctgatggaatagctgcttgttcttcttcagatgttag
gcacagtcctatttcggatctcagtttcaagccaacatcaattttatcgacgaagaaggc
tgatagaaaaaagatcaatcttgccaattgtccatcgaaaactcctagaactgttctaaa
ctttgatgagactgatagcatgaacgattcgttgaatcaagaaatggaagaaaaagaaaa
ggaaaatcacattcaagtgatcagttttcaaacagttctatcgacactttgcgatctaaa
accaggtctctccaaatatcatattgcacttattgaaaagtcaatcgagaactggaagaa
tatctccgcagtgaaatcgccagagaaaaactcccatggtccaattccgattactcctct
cggttcgatcttggaagctatgaatattgccgaagaagattccgatgtgcaggaatatgt
tccagagaaaaagaaaaaacgacgaagctcaatgatgaaagctgcgtcgctcaacccttc
gtcgctcagctcgaggactattcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGGCGCGAGAGTCAGCTGAAGCT 410 515 627 Antisense
GAATAGCTGCTTGTTCTTCTTCAGA 631 325 656 Antisense
GCACAGTCCTATTTCGGATCTCAGT 108 315 687 Antisense
GATCAATCTTGCCAATTGTCCATCG 151 423 759 Antisense
GACACTTTGCGATCTAAAACCAGGT 197 313 909 Antisense
AAACCAGGTCTCTCCAAATATCATA 304 125 925 Antisense
ATATCTCCGCAGTGAAATCGCCAGA 193 21 986 Antisense
AAACTCCCATGGTCCAATTCCGATT 576 127 1014 Antisense
CTCCTCTCGGTTCGATCTTGGAAGC 503 235 1040 Antisense
TGATGAAAGCTGCGTCGCTCAACCC 434 565 1139 Antisense
GTCGCTCAGCTCGAGGACTATTCAA 641 473 1167 Antisense
Sequence Source Affymetrix Proprietary Database