[Home] | [Total List]

[182879_at]

Description T23E1.2 /REP_DB=WormBase Gene ID /WP=CE17258 /TR=O45204 /GB=AAC04457.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 95      4grp_total > 27      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 29.7
(3)
A 		15.6
(-3)
A 		28.8
(2.6)
A 		25.5
(1.2)
A 		14
B 15.3
(-0.5)
A 		23.7
(3)
A 		18.1
(0.7)
A 		9.4
(-3)
A 		14
C 43.1
(-1.7)
A 		68.9
(1.1)
A 		31.6
(-3)
A 		86.4
(3)
A 		55
avr 29.4
(-1.6) 		36.1
(1.2) 		26.2
(-3) 		40.4
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 25.8
(-2.2)
A 		10.7
(-3)
A 		45.2
(-1.2)
A 		70.3
(0.2)
A 		122.8
(3)
A 		105
(2)
A 		112
B 16.8
(-2.9)
A 		15.8
(-3)
A 		54.8
(-0.2)
A 		22.3
(-2.5)
A 		86.5
(2.1)
A 		98.2
(3)
P 		82
C 15.2
(-2.7)
A 		9.5
(-3)
A 		41.2
(-1.4)
A 		124.8
(3)
A 		81.3
(0.7)
A 		77.2
(0.5)
A 		115
avr 19.3
(-2.5) 		12
(-3) 		47.1
(-0.5) 		72.5
(1.3) 		96.9
(3) 		93.5
(2.8) 		85
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 10.8
(3)
A 		3.4
(-3)
A 		7.5
(0.3)
A 		3.7
(-2.8)
A 		7
B 4.9
(1.5)
A 		5.9
(3)
A 		4.2
(0.4)
A 		2
(-3)
A 		4
C 14.3
(-0.8)
A 		19.8
(3)
A 		11
(-3)
A 		14.6
(-0.5)
A 		9
avr 10
(3) 		9.7
(2.4) 		7.6
(-1.5) 		6.8
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 4.8
(-2.8)
A 		3.8
(-3)
A 		9.9
(-1.9)
A 		17.8
(-0.5)
A 		37.1
(3)
A 		25.6
(0.9)
A 		33
B 5.9
(-2.9)
A 		5.3
(-3)
A 		13.3
(-1.5)
A 		5.9
(-2.9)
A 		35.2
(2.7)
A 		36.6
(3)
P 		31
C 5.6
(-2.3)
A 		2.9
(-3)
A 		10.5
(-1.1)
A 		25.1
(2.7)
A 		26.3
(3)
A 		25.8
(2.9)
A 		23
avr 5.4
(-2.7) 		4
(-3) 		11.2
(-1.5) 		16.3
(-0.4) 		32.9
(3) 		29.3
(2.3) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182879_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10901
Sequence Type Exemplar sequence
Representative Public ID T23E1.2 NCBI
Target Description T23E1.2 /REP_DB=WormBase Gene ID /WP=CE17258 /TR=O45204 /GB=AAC04457.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028229(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028229 NCBI Caenorhabditis elegans T23E1.3 (T23E1.3) mRNA, complete cds. 9/11 None
SNAP00000009475 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3146890:3153451:1 9/11 None
GENEFINDER00000009485 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3146890:3148854:1 9/11 None
T23E1.3 ENSEMBL cdna:known chromosome:CEL140:IV:3146890:3148854:1 gene:T23E1.3 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067894 1/11 Cross Hyb Matching Probes A 
SNAP00000009474 1/11 Cross Hyb Matching Probes None
GENEFINDER00000009486 1/11 Cross Hyb Matching Probes None
T23E1.2 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3140478-3148860(+) 100.0 100.0
chrIV:3056304-3061790(+) 72.09 72.09
Public Domain and Genome References
Gene Title
Ensembl T23E1.3
Entrez Gene 3565157 Entrez gene
SwissProt Q86FL9 EMBL-EBI
WormBase CE33838 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAP13767 Hypothetical protein T23E1.3 [Caenorhabditis elegans] ref|NP_001023400.1| T23E1.3 [Caenorhabditis elegans] 1.0E-127
blast AAP13767 Hypothetical protein T23E1.3 [Caenorhabditis elegans] ref|NP_001023400.1| T23E1.3 [Caenorhabditis elegans] 1.0E-123
blast AAK85470 Hypothetical protein F28A10.4 [Caenorhabditis elegans] ref|NP_493830.1| F28A10.4 [Caenorhabditis elegans] 1.0E-83
blast AAK85470 Hypothetical protein F28A10.4 [Caenorhabditis elegans] ref|NP_493830.1| F28A10.4 [Caenorhabditis elegans] 2.0E-82
blast CAE59891 Hypothetical protein CBG03375 [Caenorhabditis briggsae] 7.0E-47
blast CAE59891 Hypothetical protein CBG03375 [Caenorhabditis briggsae] 7.0E-45
Sequence
Target Sequence 
>C. ELEGANS:182879_AT
agaactcgttgagcaaccaccatctgctcctgaaaccactcatgatcctaagttttctca
aactgtgaaggttttgttgcatagaattcgaattttggagatgaaaccgaccgaccctcg
acgaaaacgtttcgcatccgaatcattgccttgtcgaaagcttccgaaacgttcaccgat
tccgaatagaaaaccagtatctattccgacagagtggatagtagaacatccaccgattcc
atcagtatctgaaaaagttccagaactgattgatgtttctgaacttcaaaatctggaaca
aatcgagtacgaacgcctgcgtccgacacttgtcactctcaccgccagacaactaaaatc
attcatggaccgtaatccggaaattgaagaaatcgccgacggactgttcagaagacattg
ccaagttgattgcccgcaggacgtaccgtacaagactatgacag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAACTCGTTGAGCAACCACCATCT 133 73 1647 Antisense
CTCCTGAAACCACTCATGATCCTAA 226 235 1673 Antisense
ACGTTTCGCATCCGAATCATTGCCT 352 93 1773 Antisense
ATCATTGCCTTGTCGAAAGCTTCCG 367 29 1788 Antisense
AAACCAGTATCTATTCCGACAGAGT 639 125 1837 Antisense
TAGTAGAACATCCACCGATTCCATC 662 645 1865 Antisense
CAAATCGAGTACGAACGCCTGCGTC 489 193 1945 Antisense
ACTCTCACCGCCAGACAACTAAAAT 113 99 1981 Antisense
GAAATCGCCGACGGACTGTTCAGAA 504 361 2035 Antisense
TTGCCAAGTTGATTGCCCGCAGGAC 581 701 2064 Antisense
GACGTACCGTACAAGACTATGACAG 186 377 2086 Antisense
Sequence Source Affymetrix Proprietary Database