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[182876_s_at]

Description T19B10.6 /REP_DB=WormBase Gene ID /WP=CE06460 /TR=Q22557 /GB=CAA98538.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 07      6grp_total > 88      4grp_total > 0      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 128
1 2 3 4 range
A 126.2
(-1.3)
P 		88.9
(-3)
A 		142.8
(-0.5)
P 		216.8
(3)
P 		128
B 112.1
(-2.2)
P 		95.9
(-3)
P 		123
(-1.6)
P 		215.6
(3)
P 		120
C 151.8
(-0.1)
P 		95.7
(-3)
P 		128.8
(-1.3)
P 		213.6
(3)
P 		118
avr 130
(-1.2) 		93.5
(-3) 		131.5
(-1.1) 		215.3
(3) 		122

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 595
1 2 3 4 5 6 range
A 83.9
(-3)
A 		101
(-2.8)
P 		117.9
(-2.6)
P 		145.4
(-2.2)
P 		375.5
(0.7)
P 		553.6
(3)
P 		470
B 138.9
(-2.9)
A 		130
(-3)
P 		158.4
(-2.6)
P 		196.8
(-2.1)
P 		442
(1.2)
P 		573
(3)
P 		443
C 108.1
(-3)
A 		139.2
(-2.7)
P 		142
(-2.6)
P 		163.5
(-2.4)
P 		465.6
(0.8)
P 		678.8
(3)
P 		571
avr 110.3
(-3) 		123.4
(-2.8) 		139.4
(-2.6) 		168.6
(-2.3) 		427.7
(0.9) 		601.8
(3) 		492
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 45.9
(3)
P 		19.3
(-3)
A 		37.3
(1.1)
P 		31.7
(-0.2)
P 		27
B 35.8
(0.3)
P 		23.7
(-3)
P 		28.5
(-1.7)
P 		45.9
(3)
P 		22
C 50.2
(3)
P 		27.5
(-3)
P 		44.9
(1.6)
P 		36
(-0.8)
P 		23
avr 44
(3) 		23.5
(-3) 		36.9
(0.9) 		37.9
(1.2) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 212
1 2 3 4 5 6 range
A 15.5
(-3)
A 		35.9
(-2)
P 		25.7
(-2.5)
P 		36.9
(-1.9)
P 		113.3
(1.9)
P 		134.8
(3)
P 		119
B 48.3
(-2.7)
A 		43.3
(-2.8)
P 		38.5
(-3)
P 		52.1
(-2.5)
P 		179.6
(1.8)
P 		213.7
(3)
P 		175
C 40.1
(-2.8)
A 		42.5
(-2.7)
P 		36.1
(-2.9)
P 		32.9
(-3)
P 		150.7
(0.6)
P 		227.2
(3)
P 		194
avr 34.6
(-3) 		40.6
(-2.7) 		33.4
(-3) 		40.6
(-2.7) 		147.9
(1.3) 		191.9
(3) 		159
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182876_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13145
Sequence Type Exemplar sequence
Representative Public ID T19B10.6 NCBI
Target Description T19B10.6 /REP_DB=WormBase Gene ID /WP=CE06460 /TR=Q22557 /GB=CAA98538.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073452(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073452 NCBI Caenorhabditis elegans T19B10.6 (T19B10.6) mRNA, complete cds. 11/11 None
SNAP00000024747 ENSEMBL cdna:SNAP chromosome:CEL140:V:11240134:11241491:-1 11/11 None
GENEFINDER00000024755 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11240134:11241491:-1 11/11 None
T19B10.6.1 ENSEMBL cdna:known chromosome:CEL140:V:11240094:11241559:-1 gene:T19B10.6 11/11 None
T19B10.6.2 ENSEMBL cdna:known chromosome:CEL140:V:11240134:11241547:-1 gene:T19B10.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11240133-11241491(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T19B10.6
Entrez Gene 179554 Entrez gene
SwissProt Q22557 EMBL-EBI
WormBase CE06460 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.18309.1.S1_S_AT similar to T19B10.6 cfa
DROSOPHILA_2:1634543_AT dm
DROSGENOME1:145124_AT dm
CHICKEN:GGAAFFX.6999.1.S1_AT similar to hypothetical protein DKFZp547N043 gga
CHICKEN:GGAAFFX.6999.3.S1_S_AT similar to hypothetical protein DKFZp547N043 gga
HG-U133_PLUS_2:223511_AT chromosome 1 open reading frame 124 hs
HG-U133B:223511_AT chromosome 1 open reading frame 124 hs
HU35KSUBB:RC_AA084733_AT chromosome 1 open reading frame 124 hs
HU35KSUBB:RC_Z39470_S_AT chromosome 1 open reading frame 124 hs
U133_X3P:G12224895_3P_AT chromosome 1 open reading frame 124 hs
HG-U95B:45397_I_AT chromosome 1 open reading frame 124 hs
HG-U95B:45398_R_AT chromosome 1 open reading frame 124 hs
HG-U95B:50598_AT chromosome 1 open reading frame 124 hs
HG-U95D:70940_AT chromosome 1 open reading frame 124 hs
HG-U95E:86230_AT chromosome 1 open reading frame 124 hs
HG-U95E:81787_I_AT Chromosome 1 open reading frame 124 hs
HG-U95E:81788_R_AT Chromosome 1 open reading frame 124 hs
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6281 DNA repair inferred from electronic annotation QuickGO AmiGO
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
8237 metallopeptidase activity inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA98538 Hypothetical protein T19B10.6 [Caenorhabditis elegans] ref|NP_505853.1| T19B10.6 [Caenorhabditis elegans] 1.0E-176
blast CAE75197 Hypothetical protein CBG23144 [Caenorhabditis briggsae] 1.0E-134
Sequence
Target Sequence 
>C. ELEGANS:182876_S_AT
aaaagatcctgcaatcgagcacccggaccgaatgatagatggtggagtcaacatcagcaa
agctgtggaggtaactttctgaaagttaaggaacctgaaggctatggacaaggaaaagga
tcaaagagaacaaacgacaaaaataaatctggcggccccgctcttaagaaaactattact
ccacctagagtgacgcttgatgacttcttcaaaaaggacggcaaaaattcttcggacaat
tcaacttcaaaatctccaactaaaccatcaacgtccttattcactgggagtggtcaaaaa
cttggaggttcttcttccacttcatcgcttcttaattcatatccaaaagcaactcaaaac
tctggtgggaaccgacttggtggtacatctggaggagtcagccgcctccttccacctgtt
aatttcacttctccttcatcagcaccagtagcagagcaagtcatagatcttggagacagt
gacgatgatgattttcaagatatggacgatgatgctttggaaatttcatttgtcgcttcg
gacaactcggtgatttgtccttcgtgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAAGATCCTGCAATCGAGCACCCG 45 133 496 Antisense
AATCGAGCACCCGGACCGAATGATA 279 167 508 Antisense
AGAGTGACGCTTGATGACTTCTTCA 280 69 682 Antisense
CTCCAACTAAACCATCAACGTCCTT 263 235 749 Antisense
CAACGTCCTTATTCACTGGGAGTGG 586 187 764 Antisense
ACTTCATCGCTTCTTAATTCATATC 608 103 814 Antisense
GCAACTCAAAACTCTGGTGGGAACC 529 303 844 Antisense
GGGAACCGACTTGGTGGTACATCTG 339 493 862 Antisense
GTACATCTGGAGGAGTCAGCCGCCT 27 461 878 Antisense
CATTTGTCGCTTCGGACAACTCGGT 702 213 1022 Antisense
AACTCGGTGATTTGTCCTTCGTGTA 655 139 1039 Antisense
Sequence Source Affymetrix Proprietary Database