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[182875_at] 7TM receptor, srbc family

Description F54B8.11 /REP_DB=WormBase Gene ID /WP=CE19889 /TR=Q9XTV7 /GB=CAB07632.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 23      4grp_total > 20      6grp_cgc > 70      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 136
1 2 3 4 range
A 59.3
(-2.2)
A 		62.9
(-1.9)
A 		50
(-3)
A 		117.8
(3)
P 		68
B 80.9
(0.1)
A 		77.3
(-0.5)
A 		62.5
(-3)
A 		98.6
(3)
P 		36
C 105.3
(0.8)
A 		89
(0.1)
A 		18.8
(-3)
A 		154.7
(3)
P 		136
avr 81.8
(-0.1) 		76.4
(-0.6) 		43.8
(-3) 		123.7
(3) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 89.5
(2.6)
A 		26.1
(-2.8)
A 		93.9
(3)
P 		26.7
(-2.7)
A 		59.8
(0.1)
A 		23.4
(-3)
A 		71
B 43.6
(1.6)
A 		54
(3)
A 		37.6
(0.7)
A 		50.8
(2.6)
A 		31.3
(-0.2)
A 		10.8
(-3)
A 		43
C 44
(-0.2)
A 		77.2
(3)
A 		27.9
(-1.7)
A 		31
(-1.4)
A 		23.2
(-2.1)
A 		14.2
(-3)
A 		63
avr 59
(3) 		52.4
(2.1) 		53.1
(2.2) 		36.2
(-0.2) 		38.1
(0.1) 		16.1
(-3) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 21.6
(3)
A 		13.7
(-2.6)
A 		13.1
(-3)
A 		17.2
(-0.1)
P 		9
B 25.8
(3)
A 		19.1
(-0.6)
A 		14.5
(-3)
A 		21
(0.5)
P 		11
C 34.8
(3)
A 		25.6
(1)
A 		6.6
(-3)
A 		26.1
(1.1)
P 		28
avr 27.4
(3) 		19.5
(0) 		11.4
(-3) 		21.4
(0.8) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 16.5
(1.4)
A 		9.3
(-1.5)
A 		20.4
(3)
P 		6.8
(-2.6)
A 		18
(2)
A 		5.7
(-3)
A 		15
B 15.2
(1.8)
A 		18
(3)
A 		9.1
(-0.8)
A 		13.5
(1.1)
A 		12.7
(0.7)
A 		4
(-3)
A 		14
C 16.3
(0.7)
A 		23.6
(3)
A 		7.1
(-2.2)
A 		6.2
(-2.5)
A 		7.5
(-2.1)
A 		4.7
(-3)
A 		19
avr 16
(2.5) 		17
(3) 		12.2
(0.6) 		8.8
(-1) 		12.7
(0.9) 		4.8
(-3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182875_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12535
Sequence Type Exemplar sequence
Representative Public ID F54B8.11 NCBI
Target Description F54B8.11 /REP_DB=WormBase Gene ID /WP=CE19889 /TR=Q9XTV7 /GB=CAB07632.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074556(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074556 NCBI Caenorhabditis elegans Serpentine Receptor, class BC (class B-like) family member (srbc-54) (srbc-54) mRNA, complete cds. 11/11 None
GENEFINDER00000032681 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15831628:15841078:-1 11/11 None
F54B8.11 ENSEMBL cdna:known chromosome:CEL140:V:15835020:15836306:-1 gene:F54B8.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15835019-15836306(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor, srbc family
Gene Symbol srbc-54
Ensembl F54B8.11
Entrez Gene 186208 Entrez gene
SwissProt Q9XTV7 EMBL-EBI
WormBase CE19889 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07632 Hypothetical protein F54B8.11 [Caenorhabditis elegans] ref|NP_506957.1| Serpentine Receptor, class BC (class B-like) family member (srbc-54) [Caenorhabditis elegans] 1.0E-137
blast CAB07631 Hypothetical protein F54B8.12 [Caenorhabditis elegans] ref|NP_506956.2| Serpentine Receptor, class BC (class B-like) family member (srbc-56) [Caenorhabditis elegans] 1.0E-136
blast CAB07632 Hypothetical protein F54B8.11 [Caenorhabditis elegans] ref|NP_506957.1| Serpentine Receptor, class BC (class B-like) family member (srbc-54) [Caenorhabditis elegans] 1.0E-102
blast CAI58635 Hypothetical protein F54B8.16 [Caenorhabditis elegans] ref|NP_001023965.1| Serpentine Receptor, class BC (class B-like) family member (srbc-55) [Caenorhabditis elegans] 1.0E-101
blast CAB07631 Hypothetical protein F54B8.12 [Caenorhabditis elegans] ref|NP_506956.2| Serpentine Receptor, class BC (class B-like) family member (srbc-56) [Caenorhabditis elegans] 2.0E-85
blast CAI58635 Hypothetical protein F54B8.16 [Caenorhabditis elegans] ref|NP_001023965.1| Serpentine Receptor, class BC (class B-like) family member (srbc-55) [Caenorhabditis elegans] 1.0E-82
Protein Domains
Database ID Description E-Value
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 1.2E-96
Pfam IPR001506 EMBL-EBI Peptidase M12A, astacin 1.3E-7
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 1.4E-81
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 3.4E-88
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 5.5E-66
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506957.1 6 10-32,45-67,82-104,125-144,178-197,210-232
F54B8.11 6 10-32,45-67,82-104,125-144,178-197,210-232
GENEFINDER00000032681 15 171-193,203-222,229-251,284-303,316-338,395-417,438-460,475-497,517-539,571-590,603-625,660-682,703-722,732-754,775-794
Sequence
Target Sequence 
>C. ELEGANS:182875_AT
tttgtccttttatctactccaggcttctttaataatgggaattgtgagagctaccatagc
tcttttgctaacactggaaagattcatagccgtatttttcccgattatttttcacaacaa
tcggcgcaaaattccgatctttttaattatttgtccaatactctgtcattttctattcga
ccaatatattcttttcggattctgtgggaatgtggtagatgttccattggattgtgataa
ctttgtgtgtacttttaacgagtgctatcaaaaatactgggaaacacatgacccggtggt
attttcacttattgagactgtttcagtacttctatttattcgactatttatctggaaaaa
ttcaaagcagcgattttgcaaggtcacccaaattgcactgctagactccctaatactttt
gctcttcaacattatcccaatatttttctactcctatttttcgtcaactttcgccaaagt
aaagtttccattgcctacagtttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTGTCCTTTTATCTACTCCAGGCT 71 665 249 Antisense
GCTACCATAGCTCTTTTGCTAACAC 456 303 298 Antisense
ATTCATAGCCGTATTTTTCCCGATT 545 11 330 Antisense
TGTCCAATACTCTGTCATTTTCTAT 176 557 400 Antisense
ACATGACCCGGTGGTATTTTCACTT 75 103 534 Antisense
GCAGCGATTTTGCAAGGTCACCCAA 690 313 615 Antisense
GGTCACCCAAATTGCACTGCTAGAC 461 501 630 Antisense
TAGACTCCCTAATACTTTTGCTCTT 343 651 650 Antisense
ATTATCCCAATATTTTTCTACTCCT 665 13 679 Antisense
TTCTACTCCTATTTTTCGTCAACTT 684 689 694 Antisense
AAAGTTTCCATTGCCTACAGTTTCA 679 121 729 Antisense
Sequence Source Affymetrix Proprietary Database