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[182874_at]

Description B0238.9 /REP_DB=WormBase Gene ID /WP=CE07699 /TR=O16485 /GB=AAB65988.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 32      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 26.4
(-2.1)
A 		18.2
(-3)
A 		37
(-0.9)
A 		72.4
(3)
A 		54
B 11.5
(-3)
A 		89.9
(0.9)
A 		130.8
(3)
A 		38.8
(-1.6)
A 		119
C 14.9
(-3)
A 		80.4
(1.4)
A 		32.4
(-1.8)
A 		103.7
(3)
A 		89
avr 17.6
(-3) 		62.8
(2) 		66.7
(2.5) 		71.6
(3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 226
1 2 3 4 5 6 range
A 6.3
(-3)
A 		42
(-2.1)
A 		12.9
(-2.8)
A 		36.6
(-2.2)
A 		112.9
(-0.2)
A 		232.7
(3)
P 		226
B 38.3
(-2.5)
A 		26.9
(-3)
A 		43.7
(-2.2)
A 		49.6
(-1.9)
A 		99.7
(0.4)
M 		154.1
(3)
P 		127
C 13.3
(-2.9)
A 		24
(-2.5)
A 		44.8
(-1.7)
A 		9.2
(-3)
A 		111.5
(0.7)
M 		174.5
(3)
P 		165
avr 19.3
(-3) 		31
(-2.6) 		33.8
(-2.5) 		31.8
(-2.6) 		108
(0.2) 		187.1
(3) 		168
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 9.6
(2.1)
A 		4
(-3)
A 		9.7
(2.2)
A 		10.6
(3)
A 		7
B 3.7
(-3)
A 		22.2
(1.2)
A 		30.3
(3)
A 		8.3
(-2)
A 		27
C 4.9
(-3)
A 		23.1
(3)
A 		11.3
(-0.9)
A 		17.5
(1.2)
A 		18
avr 6.1
(-3) 		16.4
(2.6) 		17.1
(3) 		12.1
(0.3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 1.2
(-3)
A 		14.9
(-1.5)
A 		2.8
(-2.8)
A 		9.3
(-2.1)
A 		34.1
(0.6)
A 		56.7
(3)
P 		56
B 13.3
(-2.5)
A 		8.9
(-3)
A 		10.6
(-2.8)
A 		13.1
(-2.5)
A 		40.5
(0.9)
M 		57.5
(3)
P 		49
C 4.9
(-2.7)
A 		7.3
(-2.4)
A 		11.4
(-2)
A 		1.8
(-3)
A 		36.1
(0.6)
M 		58.4
(3)
P 		57
avr 6.5
(-3) 		10.4
(-2.5) 		8.3
(-2.8) 		8.1
(-2.8) 		36.9
(0.6) 		57.5
(3) 		51
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182874_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11729
Sequence Type Exemplar sequence
Representative Public ID B0238.9 NCBI
Target Description B0238.9 /REP_DB=WormBase Gene ID /WP=CE07699 /TR=O16485 /GB=AAB65988.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072011(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072011 NCBI Caenorhabditis elegans B0238.9 (B0238.9) mRNA, complete cds. 11/11 None
SNAP00000038877 ENSEMBL cdna:SNAP chromosome:CEL140:V:5275926:5277874:-1 11/11 None
GENEFINDER00000038882 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5275926:5277913:-1 11/11 None
B0238.9 ENSEMBL cdna:known chromosome:CEL140:V:5275379:5277913:-1 gene:B0238.9 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5275925-5278118(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0238.9
Entrez Gene 178917 Entrez gene
SwissProt O16485 EMBL-EBI
WormBase CE32558 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65988 Hypothetical protein B0238.9 [Caenorhabditis elegans] ref|NP_504412.2| B0238.9 [Caenorhabditis elegans] 0.0
blast CAE62641 Hypothetical protein CBG06775 [Caenorhabditis briggsae] 1.0E-133
blast CAB58233 headcase protein [Drosophila melanogaster] 6.0E-11
Sequence
Target Sequence 
>C. ELEGANS:182874_AT
agcgacgtaatagttccagctccacttccaccacttcaggcgaaaagctatgcagcgaca
ataatgagaaacgggacaccgaaggttacaaattattcaccggatagtggtctcgatcag
caaactccaaggttttcattgtcttcttcgagtggaggagatgtcgataatcaacatgga
gacttccacgtggaaactagaatttccgagcatctcaacgcgttgggactcagcataatg
tcgccggtggagaatgcgaatgaaaatgtcaattatgaagaatcgccgttctacccggag
ctgacatcgactccaatcgtctcgaagaagcagcgggaacctctccgagcgaaaaagagc
acatctgtctcgaagcttccacttgctccgtcgtcacagctattcaatgaagaatcgcgt
tgtggattcagattcaatgtgccggttcgcgaaatgatggacatatggcaagagtctgga
gccttgtcgccggcaattcgagaaacacaggctgaaaatactgaaaaaagagctgagaat
gcgtcgggtgtactccaatat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCGACGTAATAGTTCCAGCTCCAC 491 81 982 Antisense
GTCTCGATCAGCAAACTCCAAGGTT 97 471 1091 Antisense
TTCCGAGCATCTCAACGCGTTGGGA 81 697 1185 Antisense
GGACTCAGCATAATGTCGCCGGTGG 276 523 1207 Antisense
TGACATCGACTCCAATCGTCTCGAA 669 571 1283 Antisense
GAAGAAGCAGCGGGAACCTCTCCGA 139 341 1305 Antisense
AGAGCACATCTGTCTCGAAGCTTCC 324 69 1337 Antisense
CTCCGTCGTCACAGCTATTCAATGA 688 233 1367 Antisense
TCAGATTCAATGTGCCGGTTCGCGA 77 623 1409 Antisense
GGCAAGAGTCTGGAGCCTTGTCGCC 70 535 1448 Antisense
GAATGCGTCGGGTGTACTCCAATAT 157 331 1518 Antisense
Sequence Source Affymetrix Proprietary Database