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[182873_at]

Description W03B1.1 /REP_DB=WormBase Gene ID /WP=CE14488 /TR=Q23143 /GB=AAC24436.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 1.7
(-3)
A 		3.9
(-2)
A 		12.7
(2.1)
A 		14.6
(3)
A 		13
B 0.7
(-3)
A 		3.4
(3)
A 		1
(-2.3)
A 		1.1
(-2.1)
A 		3
C 15
(-0.4)
A 		8.3
(-3)
A 		10.3
(-2.2)
A 		23.6
(3)
A 		15
avr 5.8
(-2.5) 		5.2
(-3) 		8
(-0.9) 		13.1
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 38.3
(3)
A 		17.5
(-0.4)
A 		2.2
(-2.9)
A 		1.5
(-3)
A 		20.9
(0.2)
A 		16.7
(-0.5)
A 		37
B 4
(-1.5)
A 		13
(3)
A 		1.2
(-2.9)
A 		9.8
(1.4)
A 		1
(-3)
A 		1.6
(-2.7)
A 		12
C 1
(-3)
A 		2.7
(-2.3)
A 		10.6
(0.7)
A 		2.1
(-2.6)
A 		16.4
(3)
A 		10.7
(0.8)
A 		15
avr 14.4
(3) 		11.1
(1) 		4.7
(-2.9) 		4.5
(-3) 		12.8
(2) 		9.7
(0.2) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 0.6
(-3)
A 		0.9
(-2.3)
A 		3.3
(3)
A 		2.1
(0.3)
A 		3
B 0.2
(-3)
A 		0.8
(3)
A 		0.2
(-3)
A 		0.2
(-3)
A 		1
C 5
(3)
A 		2.4
(-3)
A 		3.6
(-0.2)
A 		4
(0.7)
A 		3
avr 1.9
(0) 		1.4
(-3) 		2.4
(3) 		2.1
(1.2) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 7.1
(3)
A 		6.2
(2.2)
A 		0.5
(-2.9)
A 		0.4
(-3)
A 		6.3
(2.3)
A 		4.1
(0.3)
A 		7
B 1.4
(-1.4)
A 		4.3
(3)
A 		0.3
(-3)
A 		2.6
(0.5)
A 		0.4
(-2.9)
A 		0.6
(-2.6)
A 		4
C 0.4
(-3)
A 		0.8
(-2.5)
A 		2.7
(-0.2)
A 		0.4
(-3)
A 		5.3
(3)
A 		3.6
(0.9)
A 		5
avr 3
(0.9) 		3.8
(2.6) 		1.2
(-2.8) 		1.1
(-3) 		4
(3) 		2.8
(0.5) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182873_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10477
Sequence Type Exemplar sequence
Representative Public ID W03B1.1 NCBI
Target Description W03B1.1 /REP_DB=WormBase Gene ID /WP=CE14488 /TR=Q23143 /GB=AAC24436.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068142(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068142 NCBI Caenorhabditis elegans W03B1.1 (W03B1.1) mRNA, complete cds. 11/11 None
SNAP00000035756 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4332904:4334793:1 11/11 None
GENEFINDER00000035769 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4334369:4334793:1 11/11 None
W03B1.1 ENSEMBL cdna:known chromosome:CEL140:IV:4334369:4334793:1 gene:W03B1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4334374-4334799(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W03B1.1
Entrez Gene 189143 Entrez gene
SwissProt Q23143 EMBL-EBI
WormBase CE14488 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05677 Hypothetical protein C08F11.10 [Caenorhabditis elegans] ref|NP_502636.1| C08F11.10 [Caenorhabditis elegans] 5.0E-68
blast AAC24436 Hypothetical protein W03B1.1 [Caenorhabditis elegans] ref|NP_500543.1| W03B1.1 [Caenorhabditis elegans] 4.0E-61
blast AAC24436 Hypothetical protein W03B1.1 [Caenorhabditis elegans] ref|NP_500543.1| W03B1.1 [Caenorhabditis elegans] 1.0E-60
blast CAB05677 Hypothetical protein C08F11.10 [Caenorhabditis elegans] ref|NP_502636.1| C08F11.10 [Caenorhabditis elegans] 5.0E-47
blast AAC24438 Hypothetical protein W03B1.3 [Caenorhabditis elegans] ref|NP_500542.1| W03B1.3 [Caenorhabditis elegans] 5.0E-43
blast AAC24438 Hypothetical protein W03B1.3 [Caenorhabditis elegans] ref|NP_500542.1| W03B1.3 [Caenorhabditis elegans] 4.0E-28
Sequence
Target Sequence 
>C. ELEGANS:182873_AT
aaatgcggtcacttcgaagcaactggtaaccggagtaagaacggagccacactatcgcta
tgccgggtattacttgaaggcctatgaaatcgttgcgaatcaggaaagagataagacaaa
atacgagagtttggagccagctatcaaagcgcttttcacactggattcggagcatgagaa
gaaggttcggacgcagttggaaaacctcaagctacttaccaagtttaagttcactggaat
ctatacggaatctgttgatagatacaacaaagccgttgttctgcaggataagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATGCGGTCACTTCGAAGCAACTG 404 119 30 Antisense
ACTTCGAAGCAACTGGTAACCGGAG 326 95 40 Antisense
CTATCGCTATGCCGGGTATTACTTG 704 223 81 Antisense
AAGGCCTATGAAATCGTTGCGAATC 639 161 106 Antisense
AAAATACGAGAGTTTGGAGCCAGCT 451 133 147 Antisense
AGCCAGCTATCAAAGCGCTTTTCAC 619 83 164 Antisense
TCAAAGCGCTTTTCACACTGGATTC 132 629 173 Antisense
GTTCGGACGCAGTTGGAAAACCTCA 292 393 214 Antisense
GAAAACCTCAAGCTACTTACCAAGT 25 355 229 Antisense
CACTGGAATCTATACGGAATCTGTT 537 195 261 Antisense
AAAGCCGTTGTTCTGCAGGATAAGG 487 125 298 Antisense
Sequence Source Affymetrix Proprietary Database