[Home] | [Total List]

[182872_at]

Description C06A6.2 /REP_DB=WormBase Gene ID /WP=CE03940 /TR=Q17689 /GB=AAA82297.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 54      6grp_high1_10_10 > 44      4grp_highest_8_8 > 22      4grp_high_8_8 > 15      6grp_highest_nonorm > 90      6grp_total > 35      4grp_total > 01      6grp_high1_sub > 02      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 96.7
(-0.6)
P 		93.4
(-0.9)
P 		69.1
(-3)
P 		137.6
(3)
P 		69
B 89.8
(-0.2)
P 		66.5
(-3)
P 		107.9
(2)
P 		116.4
(3)
P 		50
C 91.7
(-3)
P 		110.9
(0)
P 		121.4
(1.7)
P 		129.7
(3)
P 		38
avr 92.7
(-2.6) 		90.3
(-3) 		99.5
(-1.5) 		127.9
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 65.3
(-0.4)
P 		110.8
(3)
P 		68.5
(-0.2)
P 		76.2
(0.4)
P 		30.4
(-3)
P 		73.7
(0.2)
P 		80
B 56.1
(0.5)
P 		68.1
(3)
P 		61.6
(1.6)
P 		48.7
(-1.1)
P 		39.6
(-3)
P 		55.9
(0.4)
P 		29
C 93.3
(2.1)
P 		99.2
(3)
P 		98.5
(2.9)
P 		60.5
(-3)
P 		74.6
(-0.8)
P 		70.2
(-1.5)
P 		39
avr 71.6
(0.2) 		92.7
(3) 		76.2
(0.8) 		61.8
(-1.2) 		48.2
(-3) 		66.6
(-0.5) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 35.2
(3)
P 		20.3
(-2.2)
P 		18.1
(-3)
P 		20.1
(-2.3)
P 		17
B 28.6
(3)
P 		16.4
(-3)
P 		25
(1.2)
P 		24.8
(1.1)
P 		12
C 30.4
(-0.5)
P 		31.9
(-0.1)
P 		42.3
(3)
P 		21.9
(-3)
P 		20
avr 31.4
(3) 		22.9
(-2.6) 		28.5
(1.1) 		22.3
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 12
(-2.4)
P 		39.4
(3)
P 		14.9
(-1.9)
P 		19.3
(-1)
P 		9.2
(-3)
P 		18
(-1.3)
P 		30
B 19.5
(1)
P 		22.7
(3)
P 		15
(-1.7)
P 		12.9
(-3)
P 		16.1
(-1)
P 		20.8
(1.8)
P 		10
C 34.6
(3)
P 		30.3
(1.8)
P 		25.1
(0.5)
P 		12.2
(-3)
P 		24.1
(0.2)
P 		23.5
(0)
P 		22
avr 22
(-0.3) 		30.8
(3) 		18.3
(-1.7) 		14.8
(-3) 		16.5
(-2.4) 		20.8
(-0.8) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182872_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8637
Sequence Type Exemplar sequence
Representative Public ID C06A6.2 NCBI
Target Description C06A6.2 /REP_DB=WormBase Gene ID /WP=CE03940 /TR=Q17689 /GB=AAA82297.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171386(11), NM_171911(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171386 NCBI Caenorhabditis elegans C06A6.2b (C06A6.2) mRNA, complete cds. 11/11 A 
NM_171911 NCBI Caenorhabditis elegans C06A6.2a (C06A6.2) mRNA, complete cds. 11/11 A 
SNAP00000040237 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7846625:7849217:1 11/11 None
C06A6.2b ENSEMBL cdna:known chromosome:CEL140:IV:7846625:7854102:1 gene:C06A6.2 11/11 A 
C06A6.2a ENSEMBL cdna:known chromosome:CEL140:IV:7846625:7854102:1 gene:C06A6.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7846630-7849159(+) 100.0 100.0
Public Domain and Genome References
Ensembl C06A6.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM75376 Hypothetical protein C06A6.2b [Caenorhabditis elegans] ref|NP_741449.1| C06A6.2b [Caenorhabditis elegans] 0.0
blast AAM75375 Hypothetical protein C06A6.2a [Caenorhabditis elegans] ref|NP_741450.1| C06A6.2a [Caenorhabditis elegans] 0.0
blast T29270 hypothetical protein C06A6.2 - Caenorhabditis elegans 0.0
Sequence
Target Sequence 
>C. ELEGANS:182872_AT
ttccgggacgaaatgttgtatctttctggagaagatcacttaatgcaatatgatttagaa
ctgagaactgttggacaagttgttaatgcaaaacgaagaggcaggccctcaaaagtcgat
aaacgatctccagttgataatttctataatttaacgccacaatctgctcaatttcaaaag
ctactggagagcaatatgtcaagtgcattcagcattgcttttgccgaatctgaattgatt
cccgatgatttaggattttcaccggcaatgtacatggctcttatcgatatgattcaagat
aaaccagaattatggcaatcaaatcatcctcaaaaggataatttacaagcacaagagcaa
ttgtttgaagatttcggaaaacaattgattataaagttccgagatacagcagatattagt
gttcttgaaaagttaacgggcccatacgttcatctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCGGGACGAAATGTTGTATCTTT 216 697 553 Antisense
GGCAGGCCCTCAAAAGTCGATAAAC 35 535 652 Antisense
GTCGATAAACGATCTCCAGTTGATA 637 471 667 Antisense
ATAATTTAACGCCACAATCTGCTCA 273 25 698 Antisense
ATGTCAAGTGCATTCAGCATTGCTT 88 47 748 Antisense
CAGCATTGCTTTTGCCGAATCTGAA 200 205 762 Antisense
GATTTAGGATTTTCACCGGCAATGT 654 427 799 Antisense
GGCAATGTACATGGCTCTTATCGAT 328 535 816 Antisense
GGCAATCAAATCATCCTCAAAAGGA 275 535 866 Antisense
AAAGTTCCGAGATACAGCAGATATT 462 121 945 Antisense
GTTAACGGGCCCATACGTTCATCTT 294 395 984 Antisense
Sequence Source Affymetrix Proprietary Database