[Home] | [Total List]

[182871_at]

Description T01C8.2 /REP_DB=WormBase Gene ID /WP=CE07459 /TR=Q22065 /GB=AAB00576.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 04      6grp_high1_10_10 > 21      4grp_highest_8_8 > 57      4grp_high_8_8 > 34      6grp_highest_nonorm > 24      6grp_total > 32      4grp_total > 45      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1610
1 2 3 4 range
A 3222.3
(3)
P 		2592.1
(0.3)
P 		1834.6
(-3)
P 		1970.4
(-2.4)
P 		1388
B 3114
(3)
P 		2661.2
(1)
P 		1968.7
(-2.1)
P 		1760.4
(-3)
P 		1354
C 3370.2
(3)
P 		2644.4
(0.1)
P 		1858.7
(-3)
P 		2007.4
(-2.4)
P 		1512
avr 3235.5
(3) 		2632.6
(0.3) 		1887.3
(-3) 		1912.7
(-2.9) 		1348

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3299
1 2 3 4 5 6 range
A 3245.4
(0.3)
P 		2924.9
(-0.3)
P 		4731.7
(3)
P 		2753.3
(-0.6)
P 		2432.8
(-1.2)
P 		1432.5
(-3)
P 		3299
B 3667.8
(2)
P 		3611
(1.8)
P 		4000.6
(3)
P 		3103.8
(0.2)
P 		3101.6
(0.2)
P 		2077
(-3)
P 		1924
C 2897.6
(0.3)
P 		3471.6
(2.8)
P 		2489.9
(-1.5)
P 		3507.6
(3)
P 		2203.3
(-2.8)
P 		2155.9
(-3)
P 		1352
avr 3270.3
(1.5) 		3335.8
(1.7) 		3740.7
(3) 		3121.6
(1) 		2579.2
(-0.8) 		1888.5
(-3) 		1852
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 885
1 2 3 4 range
A 1173.2
(3)
P 		562.7
(-1.1)
P 		479.6
(-1.7)
P 		288.4
(-3)
P 		885
B 993
(3)
P 		657.3
(-0.3)
P 		456.2
(-2.2)
P 		375.1
(-3)
P 		618
C 1115.6
(3)
P 		760.3
(0.3)
P 		647.8
(-0.6)
P 		338.5
(-3)
P 		777
avr 1093.9
(3) 		660.1
(-0.4) 		527.9
(-1.5) 		334
(-3) 		760

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 927
1 2 3 4 5 6 range
A 598.3
(-0.8)
P 		1040.2
(3)
P 		1030.5
(2.9)
P 		698.3
(0)
P 		734.1
(0.3)
P 		348.8
(-3)
P 		691
B 1276.2
(3)
P 		1202
(2.1)
P 		971.5
(-0.6)
P 		822.1
(-2.4)
P 		1260.1
(2.8)
P 		774.5
(-3)
P 		502
C 1074
(3)
P 		1059.3
(2.8)
P 		633.7
(-3)
P 		705.4
(-2)
P 		713
(-1.9)
P 		721.7
(-1.8)
P 		440
avr 982.8
(1.5) 		1100.5
(3) 		878.6
(0.3) 		741.9
(-1.4) 		902.4
(0.6) 		615
(-3) 		486
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182871_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17437
Sequence Type Exemplar sequence
Representative Public ID T01C8.2 NCBI
Target Description T01C8.2 /REP_DB=WormBase Gene ID /WP=CE07459 /TR=Q22065 /GB=AAB00576.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078306(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078306 NCBI Caenorhabditis elegans T01C8.2 (T01C8.2) mRNA, complete cds. 11/11 None
SNAP00000021219 ENSEMBL cdna:SNAP chromosome:CEL140:X:16786367:16787391:1 11/11 None
GENEFINDER00000021230 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16786367:16787391:1 11/11 None
T01C8.2 ENSEMBL cdna:known chromosome:CEL140:X:16786357:16787533:1 gene:T01C8.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16786366-16787391(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T01C8.2
Entrez Gene 181725 Entrez gene
SwissProt Q22065 EMBL-EBI
WormBase CE07459 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB00576 Hypothetical protein T01C8.2 [Caenorhabditis elegans] ref|NP_510707.1| T01C8.2 [Caenorhabditis elegans] 5.0E-42
blast CAE69896 Hypothetical protein CBG16246 [Caenorhabditis briggsae] 2.0E-39
blast CAA94608 Hypothetical protein R10H10.4 [Caenorhabditis elegans] ref|NP_501920.1| R10H10.4 [Caenorhabditis elegans] 8.0E-13
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510707.1 1 15-37
T01C8.2 1 15-37
SNAP00000021219 1 15-37
GENEFINDER00000021230 1 15-37
Sequence
Target Sequence 
>C. ELEGANS:182871_AT
atgccaaagcaagagttcaacccacttgattacactggaccactgatagttggagcaatt
ttctgcgtctttttgtttgtgatttcgttctttgttatcaacttcttctgtattaccaaa
tacgatgatattacaaagtttgaattgatgggaggtaaatatggatggcgcctaggacca
catccattgatcgttgtcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCCAAAGCAAGAGTTCAACCCAC 701 37 13 Antisense
GAGTTCAACCCACTTGATTACACTG 548 397 25 Antisense
CACTTGATTACACTGGACCACTGAT 589 195 35 Antisense
ACTGGACCACTGATAGTTGGAGCAA 703 95 46 Antisense
GGAGCAATTTTCTGCGTCTTTTTGT 37 521 64 Antisense
TTTCTGCGTCTTTTTGTTTGTGATT 638 671 72 Antisense
GTTTGTGATTTCGTTCTTTGTTATC 55 453 87 Antisense
TTCGTTCTTTGTTATCAACTTCTTC 247 695 96 Antisense
CAACTTCTTCTGTATTACCAAATAC 379 187 111 Antisense
ATATGGATGGCGCCTAGGACCACAT 47 21 171 Antisense
GACCACATCCATTGATCGTTGTCAA 84 385 188 Antisense
Sequence Source Affymetrix Proprietary Database