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[182870_at]

Description C10E2.2 /REP_DB=WormBase Gene ID /WP=CE08061 /TR=O17324 /GB=AAB71242.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 22      4grp_high_8_8 > 03      6grp_total > 13      4grp_total > 13      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 78.1
(-0.6)
P 		57.8
(-2.1)
P 		45
(-3)
A 		126.2
(3)
A 		81
B 113.3
(3)
P 		51.9
(-2.8)
P 		49.9
(-3)
P 		105.3
(2.2)
P 		63
C 88.3
(-2)
P 		99.1
(-1.2)
P 		75.9
(-3)
P 		151.9
(3)
P 		76
avr 93.2
(0.1) 		69.6
(-1.9) 		56.9
(-3) 		127.8
(3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 118.3
(3)
P 		99.4
(1.9)
P 		87.2
(1.2)
P 		76.3
(0.5)
P 		83.8
(1)
P 		16.8
(-3)
A 		102
B 103.3
(2.5)
P 		104.6
(2.7)
P 		106.6
(3)
P 		97.1
(1.6)
P 		71.2
(-2.3)
P 		66.5
(-3)
P 		40
C 95.7
(0.5)
P 		121.6
(3)
P 		95.2
(0.5)
P 		97.3
(0.7)
P 		89
(-0.1)
P 		58.6
(-3)
P 		63
avr 105.8
(2.7) 		108.5
(3) 		96.3
(1.8) 		90.2
(1.2) 		81.3
(0.3) 		47.3
(-3) 		61
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 28.4
(3)
P 		12.6
(-2.7)
P 		11.8
(-3)
A 		18.5
(-0.6)
A 		17
B 36.1
(3)
P 		12.8
(-2.7)
P 		11.6
(-3)
P 		22.4
(-0.4)
P 		25
C 29.2
(3)
P 		28.5
(1.8)
P 		26.5
(-1.5)
P 		25.6
(-3)
P 		4
avr 31.2
(3) 		18
(-2.4) 		16.6
(-3) 		22.2
(-0.7) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 21.8
(0.4)
P 		35.4
(3)
P 		19
(-0.1)
P 		19.3
(-0.1)
P 		25.3
(1.1)
P 		4.1
(-3)
A 		31
B 35.9
(3)
P 		34.8
(2.4)
P 		25.9
(-2.4)
P 		25.7
(-2.5)
P 		28.9
(-0.8)
P 		24.8
(-3)
P 		11
C 35.5
(2.5)
P 		37.1
(3)
P 		24.2
(-1.4)
P 		19.6
(-3)
P 		28.8
(0.2)
P 		19.6
(-3)
P 		18
avr 31.1
(1.6) 		35.8
(3) 		23
(-0.9) 		21.5
(-1.4) 		27.7
(0.5) 		16.2
(-3) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182870_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17773
Sequence Type Exemplar sequence
Representative Public ID C10E2.2 NCBI
Target Description C10E2.2 /REP_DB=WormBase Gene ID /WP=CE08061 /TR=O17324 /GB=AAB71242.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078300(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078300 NCBI Caenorhabditis elegans C10E2.2 (C10E2.2) mRNA, complete cds. 11/11 None
GENEFINDER00000026952 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16745666:16748036:1 11/11 None
SNAP00000026944 ENSEMBL cdna:SNAP chromosome:CEL140:X:16745874:16748036:1 11/11 None
C10E2.2 ENSEMBL cdna:known chromosome:CEL140:X:16745799:16748036:1 gene:C10E2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16745798-16748036(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C10E2.2
Entrez Gene 182497 Entrez gene
SwissProt O17324 EMBL-EBI
WormBase CE08061 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71242 Hypothetical protein C10E2.2 [Caenorhabditis elegans] ref|NP_510701.1| C10E2.2 [Caenorhabditis elegans] 0.0
blast CAE69944 Hypothetical protein CBG16327 [Caenorhabditis briggsae] 1.0E-170
blast CAE69944 Hypothetical protein CBG16327 [Caenorhabditis briggsae] 1.0E-139
blast CAG12804 unnamed protein product [Tetraodon nigroviridis] 4.0E-13
blast CAG03587 unnamed protein product [Tetraodon nigroviridis] 2.0E-9
Sequence
Target Sequence 
>C. ELEGANS:182870_AT
gatgtgatttcacctcaactcgtgtgaaagttaaagtgggaaacttgaaattccatcctc
acacaagtacaataactcatcaaccgactgctgatcagttcccggaaagtcctgattctg
tatcatatcacaacattgaaacacttccactttgggtctatgaaacacttgccgactatc
ttccaagttcagctttatttaacttatcattggtgaatagaactttacgaaaagttgtct
tcatcgcaatgaattcaaaatgttacgtggagccagtgtgggaaatggaacgtcaaggga
agtgggctctaaaacaatatatctggaaagtgacttcaaccgagccaccaccagaaaccg
aatggagggttcctgtcgaactcaacaatcacatttctcaatgccagtattttaatccag
ttagctatgaagagaaaatggtccctgtgttctcacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGTGATTTCACCTCAACTCGTGT 78 409 698 Antisense
GAAACTTGAAATTCCATCCTCACAC 220 357 737 Antisense
GTACAATAACTCATCAACCGACTGC 268 461 764 Antisense
TCAACCGACTGCTGATCAGTTCCCG 457 631 777 Antisense
CAGTTCCCGGAAAGTCCTGATTCTG 368 207 793 Antisense
GAAACACTTCCACTTTGGGTCTATG 564 355 835 Antisense
ATGAAACACTTGCCGACTATCTTCC 237 43 857 Antisense
GACTATCTTCCAAGTTCAGCTTTAT 592 371 871 Antisense
TGGAAAGTGACTTCAACCGAGCCAC 394 547 1021 Antisense
GGAGGGTTCCTGTCGAACTCAACAA 266 515 1061 Antisense
AGAAAATGGTCCCTGTGTTCTCACG 382 73 1130 Antisense
Sequence Source Affymetrix Proprietary Database