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[182869_at]

Description F07H5.10 /REP_DB=WormBase Gene ID /WP=CE03159 /TR=Q19174 /GB=CAA92656.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 16      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 69.8
(-3)
A 		75.5
(-2.5)
A 		135.5
(3)
A 		132.9
(2.8)
A 		66
B 77.8
(-3)
P 		89.9
(-2.2)
A 		82.1
(-2.7)
M 		172.3
(3)
P 		95
C 60.7
(-3)
A 		92.1
(-1.1)
A 		70.3
(-2.4)
P 		162.1
(3)
P 		101
avr 69.4
(-3) 		85.8
(-1.9) 		96
(-1.2) 		155.8
(3) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 393
1 2 3 4 5 6 range
A 35.1
(-3)
A 		74.6
(-2.2)
A 		70.2
(-2.3)
P 		154.2
(-0.5)
P 		324.3
(3)
P 		319.9
(2.9)
P 		289
B 60.1
(-3)
A 		70.8
(-2.8)
A 		138.8
(-1.7)
P 		159
(-1.4)
P 		249.1
(0.1)
P 		428
(3)
P 		368
C 59.3
(-3)
A 		83.8
(-2.6)
A 		96.6
(-2.3)
A 		150.1
(-1.4)
P 		279.7
(0.9)
P 		397.7
(3)
P 		338
avr 51.5
(-3) 		76.4
(-2.5) 		101.9
(-2.1) 		154.4
(-1.1) 		284.4
(1.2) 		381.9
(3) 		330
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 25.4
(-0.2)
A 		16.4
(-3)
A 		35.4
(3)
A 		19.5
(-2)
A 		19
B 24.8
(-1)
P 		22.2
(-1.9)
A 		19
(-3)
M 		36.7
(3)
P 		18
C 20.1
(-3)
A 		26.5
(2.3)
A 		24.5
(0.7)
P 		27.3
(3)
P 		7
avr 23.4
(-1.3) 		21.7
(-3) 		26.3
(1.5) 		27.8
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 153
1 2 3 4 5 6 range
A 6.5
(-3)
A 		26.5
(-1.7)
A 		15.3
(-2.4)
P 		39.1
(-0.9)
P 		97.9
(3)
P 		77.9
(1.7)
P 		91
B 20.9
(-3)
A 		23.6
(-2.9)
A 		33.7
(-2.4)
P 		42.1
(-2.1)
P 		101.2
(0.5)
P 		159.6
(3)
P 		139
C 22
(-3)
A 		25.6
(-2.8)
A 		24.6
(-2.9)
A 		30.2
(-2.6)
P 		90.5
(0.7)
P 		133.1
(3)
P 		111
avr 16.5
(-3) 		25.2
(-2.5) 		24.5
(-2.6) 		37.1
(-1.8) 		96.5
(1.5) 		123.5
(3) 		107
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182869_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3446
Sequence Type Exemplar sequence
Representative Public ID F07H5.10 NCBI
Target Description F07H5.10 /REP_DB=WormBase Gene ID /WP=CE03159 /TR=Q19174 /GB=CAA92656.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063475(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063475 NCBI Caenorhabditis elegans F07H5.10 (F07H5.10) mRNA, complete cds. 11/11 None
SNAP00000026210 ENSEMBL cdna:SNAP chromosome:CEL140:II:8807243:8808499:-1 11/11 None
GENEFINDER00000026213 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8806898:8808499:-1 11/11 None
F07H5.10 ENSEMBL cdna:known chromosome:CEL140:II:8807108:8808499:-1 gene:F07H5.10 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8807228-8808496(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F07H5.10
Entrez Gene 174408 Entrez gene
SwissProt Q19174 EMBL-EBI
WormBase CE28906 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92656 Hypothetical protein F07H5.10 [Caenorhabditis elegans] ref|NP_495876.1| F07H5.10 [Caenorhabditis elegans] 0.0
blast CAA92656 Hypothetical protein F07H5.10 [Caenorhabditis elegans] ref|NP_495876.1| F07H5.10 [Caenorhabditis elegans] 1.0E-174
blast CAE59738 Hypothetical protein CBG03179 [Caenorhabditis briggsae] 1.0E-106
blast CAE59738 Hypothetical protein CBG03179 [Caenorhabditis briggsae] 1.0E-101
Sequence
Target Sequence 
>C. ELEGANS:182869_AT
acgagtgagccgattcaccgaactcaaaacgagatttctctgttgtcgctatgtcctttg
tgcaattgatgatgtgatgcaaaagcaaaaaccaatggaattgatggcaattcgtttgaa
tggagacatttacattggcgctaataaatctatggatttgcaaactgacaagaagaccca
agaggcggcattcggtggtttgaatttcgccatgaaggttacgagagaatccgatcaaaa
aatactcaaaaagcatcacagtgtcgtcaagcaattgcgaattgagaacacgagaaattc
aatgtcaatgtcaattttcgtttcaagtgtcgcccgtgcttttgatcaacgaggaaacgt
tgttgaattgaagacagttggctcgaaagttatgggaaaagttcagaacctttcaagatt
gaaagctagagactggtggcttcgagctttgttgagtggagctgaccgcattgtttac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGAGTGAGCCGATTCACCGAACTC 268 93 297 Antisense
ACGAGATTTCTCTGTTGTCGCTATG 370 93 325 Antisense
GTCGCTATGTCCTTTGTGCAATTGA 259 475 341 Antisense
GGAGACATTTACATTGGCGCTAATA 585 519 418 Antisense
GACCCAAGAGGCGGCATTCGGTGGT 412 381 471 Antisense
TTCGGTGGTTTGAATTTCGCCATGA 558 695 487 Antisense
GCATCACAGTGTCGTCAAGCAATTG 346 307 549 Antisense
TCAATTTTCGTTTCAAGTGTCGCCC 76 633 607 Antisense
TCGCCCGTGCTTTTGATCAACGAGG 8 601 626 Antisense
GTGGCTTCGAGCTTTGTTGAGTGGA 244 491 732 Antisense
GAGTGGAGCTGACCGCATTGTTTAC 597 401 750 Antisense
Sequence Source Affymetrix Proprietary Database