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[182868_at]

Description F16A11.3 /REP_DB=WormBase Gene ID /WP=CE23664 /TR=Q9U3J0 /GB=CAB60288.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 21      4grp_total > 21      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 120
1 2 3 4 range
A 78.3
(-0.3)
P 		29.5
(-2.7)
A 		24.2
(-3)
A 		143.7
(3)
P 		120
B 104.5
(3)
P 		67.9
(-1)
A 		49.3
(-3)
P 		58.4
(-2)
A 		55
C 63.8
(-1)
P 		70
(-0.6)
A 		28.6
(-3)
A 		133.9
(3)
P 		105
avr 82.2
(0.7) 		55.8
(-1.3) 		34
(-3) 		112
(3) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 25.6
(-2.6)
A 		57.7
(-0)
P 		95.9
(3)
P 		27
(-2.5)
A 		40.9
(-1.4)
A 		20.2
(-3)
A 		76
B 84.5
(3)
P 		67.1
(1.4)
P 		76.9
(2.3)
P 		65
(1.2)
A 		19.6
(-3)
A 		46.4
(-0.5)
P 		65
C 56.8
(-1.1)
P 		89.8
(3)
P 		41.9
(-3)
A 		50.1
(-2)
A 		45.2
(-2.6)
A 		42.9
(-2.9)
A 		48
avr 55.6
(0.4) 		71.5
(3) 		71.6
(3) 		47.4
(-1) 		35.2
(-3) 		36.5
(-2.8) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 28.5
(3)
P 		6.4
(-3)
A 		6.3
(-3)
A 		21
(1)
P 		22
B 33.3
(3)
P 		16.8
(-1.5)
A 		11.4
(-3)
P 		12.4
(-2.7)
A 		22
C 21.1
(2.3)
P 		20.1
(1.8)
A 		10
(-3)
A 		22.6
(3)
P 		13
avr 27.6
(3) 		14.4
(-1.3) 		9.2
(-3) 		18.7
(0.1) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 4.7
(-3)
A 		20.5
(2.9)
P 		20.9
(3)
P 		6.9
(-2.2)
A 		12.3
(-0.2)
A 		4.9
(-2.9)
A 		16
B 29.4
(3)
P 		22.3
(1)
P 		18.7
(0)
P 		17.2
(-0.4)
A 		8
(-3)
A 		17.3
(-0.4)
P 		21
C 21
(0.8)
P 		27.4
(3)
P 		10.7
(-2.8)
A 		10.1
(-3)
A 		14.6
(-1.4)
A 		14.3
(-1.5)
A 		17
avr 18.4
(0.5) 		23.4
(3) 		16.8
(-0.3) 		11.4
(-3) 		11.6
(-2.9) 		12.2
(-2.6) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182868_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.339
Sequence Type Exemplar sequence
Representative Public ID F16A11.3 NCBI
Target Description F16A11.3 /REP_DB=WormBase Gene ID /WP=CE23664 /TR=Q9U3J0 /GB=CAB60288.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026217(11), NM_001026218(11), NM_001026219(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026217 NCBI Caenorhabditis elegans F16A11.3a (F16A11.3) mRNA, complete cds. 11/11 None
NM_001026218 NCBI Caenorhabditis elegans F16A11.3b (F16A11.3) mRNA, complete cds. 11/11 None
NM_001026219 NCBI Caenorhabditis elegans F16A11.3c (F16A11.3) mRNA, complete cds. 11/11 None
GENEFINDER00000004135 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9394426:9398440:-1 11/11 None
SNAP00000004129 ENSEMBL cdna:SNAP chromosome:CEL140:I:9396117:9398440:-1 11/11 None
F16A11.3a ENSEMBL cdna:known chromosome:CEL140:I:9372297:9397708:-1 gene:F16A11.3 11/11 A 
F16A11.3b ENSEMBL cdna:known chromosome:CEL140:I:9372900:9397708:-1 gene:F16A11.3 11/11 A 
F16A11.3c ENSEMBL cdna:known chromosome:CEL140:I:9374677:9397757:-1 gene:F16A11.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9396047-9398037(-) 100.0 100.0
Public Domain and Genome References
Ensembl F16A11.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAH10801 Hypothetical protein F16A11.3a [Caenorhabditis elegans] emb|CAH10794.1| Hypothetical protein F16A11.3a [Caenorhabditis elegans] ref|NP_001021388.1| F16A11.3a [Caenorhabditis elegans] 0.0
blast T23714 hypothetical protein M04C9.6a - Caenorhabditis elegans 0.0
blast CAH10800 Hypothetical protein F16A11.3c [Caenorhabditis elegans] emb|CAH10793.1| Hypothetical protein F16A11.3c [Caenorhabditis elegans] ref|NP_001021390.1| F16A11.3c [Caenorhabditis elegans] 0.0
blast CAH10802 Hypothetical protein F16A11.3b [Caenorhabditis elegans] emb|CAH10795.1| Hypothetical protein F16A11.3b [Caenorhabditis elegans] ref|NP_001021389.1| F16A11.3b [Caenorhabditis elegans] 0.0
blast T23713 hypothetical protein M04C9.6b - Caenorhabditis elegans 0.0
blast T23715 hypothetical protein M04C9.6c - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000357 EMBL-EBI HEAT 8.7E-9
Pfam IPR000357 EMBL-EBI HEAT 2.7E-8
Pfam IPR000357 EMBL-EBI HEAT 2.3E-5
Pfam IPR000357 EMBL-EBI HEAT 6.5E-9
Pfam IPR000357 EMBL-EBI HEAT 3.1E-6
Pfam IPR000357 EMBL-EBI HEAT 2.3E-5
Pfam IPR000357 EMBL-EBI HEAT 6.5E-9
Pfam IPR000357 EMBL-EBI HEAT 3.1E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000004135 2 15-32,53-75
Sequence
Target Sequence 
>C. ELEGANS:182868_AT
acaacttggcggtgctatctttatcgatgatgctgaagatgagccaccaagagtcaaaag
ttcagaagattcgagaccggctccacattggctggacagtccaagagacagcacgacgct
tccagatatcattgcttcaacatatagtgatttcatagatgaagcagaatatgcgacaaa
acagatgctggccatcttggaaacactgaatcctatcgaagagtacattgaactatttga
gagctcattcaaagccatagaggtccgattgccattcgatgtgattttaaatgatgaaaa
aaaaccagattgggatgcgattcggcgaaaactgattatgggcagtctgacagtgaatac
aacatctgaaaagccaggaataaccactaatcagatgacagcgatatttgacgctattcc
atttctttttgatgccgttgcttgcaatccggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAACTTGGCGGTGCTATCTTTATC 99 113 312 Antisense
TCAGAAGATTCGAGACCGGCTCCAC 403 621 373 Antisense
GCTCCACATTGGCTGGACAGTCCAA 487 297 391 Antisense
GTCCAAGAGACAGCACGACGCTTCC 590 477 410 Antisense
GACGCTTCCAGATATCATTGCTTCA 338 381 426 Antisense
GATGCTGGCCATCTTGGAAACACTG 647 411 495 Antisense
AGAGGTCCGATTGCCATTCGATGTG 422 67 570 Antisense
AACCAGATTGGGATGCGATTCGGCG 102 147 614 Antisense
GCGATATTTGACGCTATTCCATTTC 414 291 712 Antisense
GCTATTCCATTTCTTTTTGATGCCG 152 305 724 Antisense
TGATGCCGTTGCTTGCAATCCGGAA 202 567 741 Antisense
Sequence Source Affymetrix Proprietary Database