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[182867_at]

Description C05G6.1 /REP_DB=WormBase Gene ID /WP=CE16828 /TR=O45054 /GB=AAC02558.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 43      6grp_cgc > 88      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 36.7
(-0.5)
A 		71.2
(3)
A 		56
(1.5)
M 		11.4
(-3)
A 		60
B 57.3
(3)
A 		39
(-3)
A 		46
(-0.7)
M 		56.3
(2.7)
A 		18
C 52
(-3)
A 		83.9
(3)
A 		52.7
(-2.9)
P 		68.7
(0.1)
A 		32
avr 48.7
(-2) 		64.7
(3) 		51.6
(-1.1) 		45.5
(-3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 55.8
(-1.1)
A 		42.5
(-3)
A 		53.1
(-1.5)
A 		64.5
(0.2)
A 		84
(3)
P 		43.7
(-2.8)
M 		42
B 78
(3)
P 		67
(2)
P 		13.2
(-3)
A 		45.3
(-0)
A 		74.5
(2.7)
P 		75.6
(2.8)
P 		65
C 57.2
(-0.5)
A 		13.7
(-3)
A 		51.9
(-0.8)
A 		56.2
(-0.6)
A 		119.4
(3)
P 		57.4
(-0.5)
P 		106
avr 63.7
(-0.3) 		41.1
(-2.8) 		39.4
(-3) 		55.3
(-1.2) 		92.6
(3) 		58.9
(-0.8) 		53
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 13.4
(2.1)
A 		15.5
(3)
A 		14.6
(2.6)
M 		1.7
(-3)
A 		14
B 18.3
(3)
A 		9.6
(-3)
A 		10.7
(-2.2)
M 		12
(-1.3)
A 		9
C 17.2
(-0.3)
A 		24.1
(3)
A 		18.4
(0.3)
P 		11.6
(-3)
A 		13
avr 16.3
(2.9) 		16.4
(3) 		14.6
(1.7) 		8.4
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 10.3
(-3)
A 		15.1
(-1.1)
A 		11.6
(-2.5)
A 		16.4
(-0.6)
A 		25.3
(3)
P 		10.6
(-2.9)
M 		15
B 27.2
(2.3)
P 		22.3
(1.2)
P 		3.2
(-3)
A 		12
(-1.1)
A 		30.3
(3)
P 		28.2
(2.5)
P 		27
C 21.2
(-0)
A 		4.2
(-3)
A 		13.2
(-1.4)
A 		11.3
(-1.8)
A 		38.6
(3)
P 		19.2
(-0.4)
P 		34
avr 19.6
(-0.2) 		13.9
(-1.8) 		9.3
(-3) 		13.2
(-1.9) 		31.4
(3) 		19.3
(-0.3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182867_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11233
Sequence Type Exemplar sequence
Representative Public ID C05G6.1 NCBI
Target Description C05G6.1 /REP_DB=WormBase Gene ID /WP=CE16828 /TR=O45054 /GB=AAC02558.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067560(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067560 NCBI Caenorhabditis elegans Nuclear Hormone Receptor family member (nhr-76) (nhr-76) mRNA, complete cds. 11/11 None
SNAP00000014191 ENSEMBL cdna:SNAP chromosome:CEL140:IV:631797:633840:1 11/11 None
C05G6.1 ENSEMBL cdna:known chromosome:CEL140:IV:627537:633942:1 gene:C05G6.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000014192 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:630183-633850(+) 82.54 82.54
Public Domain and Genome References
Gene Title
Gene Symbol nhr-76
Ensembl C05G6.1
Entrez Gene 182276 Entrez gene
SwissProt Q65CM0 EMBL-EBI
WormBase CE37476 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAU87830 Nuclear hormone receptor family protein 76 [Caenorhabditis elegans] ref|NP_499961.2| Nuclear Hormone Receptor family member (nhr-76) [Caenorhabditis elegans] 0.0
blast T32951 hypothetical protein C05G6.1 - Caenorhabditis elegans 1.0E-134
blast CAE73728 Hypothetical protein CBG21251 [Caenorhabditis briggsae] 3.0E-99
blast AAU87830 Nuclear hormone receptor family protein 76 [Caenorhabditis elegans] ref|NP_499961.2| Nuclear Hormone Receptor family member (nhr-76) [Caenorhabditis elegans] 1.0E-77
blast T32951 hypothetical protein C05G6.1 - Caenorhabditis elegans 2.0E-52
blast CAE73728 Hypothetical protein CBG21251 [Caenorhabditis briggsae] 1.0E-43
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 5.1E-26
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 2.6E-24
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 1.9E-13
Sequence
Target Sequence 
>C. ELEGANS:182867_AT
gacgacgaattcacacaaatcaccgagtctgtcatggacaaggaaacgtgtctgaaactg
ctctacgacccgctgcggtcgtgtttgaacgaacttggatccgcgttagagcactctaga
atgacagacaccgagttttgtgctctttttgcaatattgttattcaatacagccgctgat
aacttatcggacgcgagtcgtaacgccgtagtgatggccagaaatcgggtgatgaaggat
tggttcgaaagattctggtttgttctgaacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntccaggctggt
cttctcgtgggcaacacgttgcttcttctgacagccgtccgcaatgcgatggcagttcac
cgtgaaa

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGACGAATTCACACAAATCACCG 274 377 529 Antisense
CAAATCACCGAGTCTGTCATGGACA 703 191 544 Antisense
GGAAACGTGTCTGAAACTGCTCTAC 45 529 570 Antisense
TACGACCCGCTGCGGTCGTGTTTGA 127 649 592 Antisense
CGAACTTGGATCCGCGTTAGAGCAC 90 253 618 Antisense
ACCGAGTTTTGTGCTCTTTTTGCAA 493 89 658 Antisense
CAGCCGCTGATAACTTATCGGACGC 444 203 698 Antisense
ATCGGACGCGAGTCGTAACGCCGTA 103 35 714 Antisense
GTGGGCAACACGTTGCTTCTTCTGA 231 489 1015 Antisense
ACAGCCGTCCGCAATGCGATGGCAG 308 95 1039 Antisense
AATGCGATGGCAGTTCACCGTGAAA 396 167 1051 Antisense
Sequence Source Affymetrix Proprietary Database