[Home] | [Total List]

[182866_s_at]

Description F30B5.7 /REP_DB=WormBase Gene ID /WP=CE28225 /TR=Q19913 /GB=AAA83498.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 30      6grp_high1_10_10 > 05      4grp_highest_8_8 > 31      4grp_high_8_8 > 20      6grp_highest_nonorm > 60      6grp_total > 05      4grp_total > 20      6grp_highest_sub > De      6grp_high1_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 507
1 2 3 4 range
A 485.8
(0.8)
P 		380.1
(-1.3)
P 		290.4
(-3)
P 		601.5
(3)
P 		311
B 351.6
(-1)
P 		403.3
(0)
P 		259.1
(-3)
P 		543.4
(3)
P 		284
C 307.1
(-2.5)
P 		399.8
(-1.4)
P 		265.9
(-3)
P 		765.6
(3)
P 		500
avr 381.5
(-1.2) 		394.4
(-1) 		271.8
(-3) 		636.8
(3) 		365

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 352
1 2 3 4 5 6 range
A 525.1
(3)
P 		478.2
(1.9)
P 		263.1
(-3)
P 		292.6
(-2.3)
P 		380.3
(-0.3)
P 		357.8
(-0.8)
P 		262
B 545.7
(3)
P 		427.8
(0.8)
P 		418.9
(0.6)
P 		352.5
(-0.6)
P 		348.7
(-0.7)
P 		224.8
(-3)
P 		321
C 499.5
(2.4)
P 		531.5
(3)
P 		424.4
(1.1)
P 		399.4
(0.7)
P 		359
(-0.1)
P 		193.3
(-3)
P 		338
avr 523.4
(3) 		479.2
(2) 		368.8
(-0.5) 		348.2
(-1) 		362.7
(-0.6) 		258.6
(-3) 		265
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 117
1 2 3 4 range
A 176.9
(3)
P 		82.5
(-2.6)
P 		75.9
(-3)
P 		88
(-2.3)
P 		101
B 112.1
(2.6)
P 		99.6
(1.3)
P 		60.1
(-3)
P 		115.8
(3)
P 		56
C 101.7
(-1.5)
P 		115
(0.7)
P 		92.7
(-3)
P 		129.1
(3)
P 		36
avr 130.2
(3) 		99
(-0.5) 		76.2
(-3) 		111
(0.9) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 133
1 2 3 4 5 6 range
A 96.8
(-0.9)
P 		170.1
(3)
P 		57.3
(-3)
P 		74.2
(-2.1)
P 		114.7
(0.1)
P 		87.1
(-1.4)
P 		113
B 189.9
(3)
P 		142.4
(0.3)
P 		101.7
(-2)
P 		93.4
(-2.5)
P 		141.7
(0.3)
P 		83.8
(-3)
P 		106
C 185.2
(3)
P 		162.2
(1.9)
P 		108
(-0.8)
P 		80.3
(-2.2)
P 		116.2
(-0.4)
P 		64.7
(-3)
P 		121
avr 157.3
(2.9) 		158.2
(3) 		89
(-2.2) 		82.6
(-2.7) 		124.2
(0.4) 		78.5
(-3) 		80
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182866_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11031
Sequence Type Exemplar sequence
Representative Public ID F30B5.7 NCBI
Target Description F30B5.7 /REP_DB=WormBase Gene ID /WP=CE28225 /TR=Q19913 /GB=AAA83498.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068116(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068116 NCBI Caenorhabditis elegans F30B5.7 (F30B5.7) mRNA, complete cds. 11/11 A 
GENEFINDER00000023161 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4226052:4231838:-1 11/11 None
F30B5.7 ENSEMBL cdna:known chromosome:CEL140:IV:4229188:4231853:-1 gene:F30B5.7 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000023156 5/11 Cross Hyb Matching Probes None
SNAP00000023157 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4229212-4231194(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F30B5.7
Entrez Gene 177186 Entrez gene
SwissProt Q19913 EMBL-EBI
WormBase CE28225 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
30001 metal ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
46873 metal ion transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_500517 F30B5.7 [Caenorhabditis elegans] gb|AAA83498.2| Hypothetical protein F30B5.7 [Caenorhabditis elegans] 1.0E-170
blast NP_500517 F30B5.7 [Caenorhabditis elegans] gb|AAA83498.2| Hypothetical protein F30B5.7 [Caenorhabditis elegans] 1.0E-135
blast CAE61457 Hypothetical protein CBG05348 [Caenorhabditis briggsae] 1.0E-111
blast NP_500516 Serpentine Receptor, class BC (class B-like) family member (srbc-70) [Caenorhabditis elegans] gb|AAA83495.1| Hypothetical protein F30B5.6 [Caenorhabditis elegans] 1.0E-110
blast NP_001023162 Serpentine Receptor, class BC (class B-like) family member (srbc-71) [Caenorhabditis elegans] gb|AAW88401.1| Hypothetical protein F30B5.8 [Caenorhabditis elegans] 1.0E-85
blast CAE70853 Hypothetical protein CBG17638 [Caenorhabditis briggsae] 4.0E-82
Protein Domains
Database ID Description E-Value
Pfam IPR003689 EMBL-EBI Zinc transporter ZIP 1.8E-52
Pfam IPR003689 EMBL-EBI Zinc transporter ZIP 4.0E-35
Pfam IPR003689 EMBL-EBI Zinc transporter ZIP 1.3E-9
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 4.1E-86
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500517.1 7 10-30,43-65,85-102,202-224,234-256,268-290,303-320
F30B5.7 7 10-30,43-65,85-102,202-224,234-256,268-290,303-320
GENEFINDER00000023161 11 10-30,43-65,85-102,288-310,330-352,365-382,420-442,463-485,518-537,550-572,587-609
Sequence
Target Sequence 
>C. ELEGANS:182866_S_AT
agaagcctcaacctgggtagtctctgatgaaaagtcgaacattctgaaatccctgacctt
cgccgtcgcaatgtccttccactcactcctagaaggatttgccctcggagttcaggactc
gaaaggaaggatctacgcgttgttcttctcactgttgctacacaagggtgttgaggcatt
ttcagttggcttgcagatttctatggctaattcgaataaggtcaaaaccgtcctcgccac
catcctcatctacagtctcatggccccactcggctccatcatgggctccatcctccaaaa
ctcggaaaccaacatttacaaagactgtgccatcctgctcctcgaatcccttgccgctgg
aacatttatctacgtgacattcatcgagataatggcatccgagaagagcaacgactttaa
ccatttgaaacagttgttatggatcataatcgggttcgccttggtcacaaccatgcaggt
cttcttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAAGCCTCAACCTGGGTAGTCTCT 344 73 261 Antisense
GAACATTCTGAAATCCCTGACCTTC 209 347 297 Antisense
GTCCTTCCACTCACTCCTAGAAGGA 194 477 333 Antisense
TTGCCCTCGGAGTTCAGGACTCGAA 187 701 359 Antisense
GAAGGATCTACGCGTTGTTCTTCTC 35 335 386 Antisense
GTTGGCTTGCAGATTTCTATGGCTA 117 437 445 Antisense
CCATCCTCATCTACAGTCTCATGGC 640 271 500 Antisense
TTACAAAGACTGTGCCATCCTGCTC 604 683 576 Antisense
AATCCCTTGCCGCTGGAACATTTAT 679 167 605 Antisense
GATCATAATCGGGTTCGCCTTGGTC 617 417 702 Antisense
GGTCACAACCATGCAGGTCTTCTTT 704 501 723 Antisense
Sequence Source Affymetrix Proprietary Database