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[182865_at]

Description R08H2.10 /REP_DB=WormBase Gene ID /WP=CE12612 /TR=O17992 /GB=CAB04635.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 7.4
(-3)
A 		9.8
(-1.1)
A 		14.8
(3)
A 		13.7
(2.1)
A 		7
B 1.1
(-2.9)
A 		21
(1.6)
A 		0.7
(-3)
A 		26.9
(3)
A 		26
C 11.4
(-2)
A 		26.6
(-0.4)
A 		2.4
(-3)
A 		57.8
(3)
M 		55
avr 6.6
(-2.9) 		19.1
(-0.1) 		6
(-3) 		32.8
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 31.9
(3)
A 		1.2
(-3)
A 		16.2
(-0.1)
A 		18.9
(0.5)
A 		21.1
(0.9)
A 		2.3
(-2.8)
A 		31
B 13.8
(0.1)
A 		12.3
(-0.2)
A 		1.5
(-2.8)
A 		26
(3)
A 		1.6
(-2.7)
A 		0.5
(-3)
A 		26
C 6.8
(-1.4)
A 		9.5
(-0.4)
A 		2.9
(-2.8)
A 		2.3
(-3)
A 		5.7
(-1.8)
A 		18.7
(3)
A 		16
avr 17.5
(3) 		7.7
(-2.5) 		6.9
(-3) 		15.7
(2) 		9.5
(-1.5) 		7.2
(-2.8) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 2.7
(-0.8)
A 		2.1
(-2.7)
A 		3.9
(3)
A 		2
(-3)
A 		2
B 0.3
(-2.9)
A 		5.2
(2.5)
A 		0.2
(-3)
A 		5.7
(3)
A 		6
C 3.8
(-1)
A 		7.6
(1.6)
A 		0.8
(-3)
A 		9.7
(3)
M 		9
avr 2.3
(-2) 		5
(1.9) 		1.6
(-3) 		5.8
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 5.9
(2.5)
A 		0.4
(-3)
A 		3.5
(0.1)
A 		4.8
(1.4)
A 		6.4
(3)
A 		0.6
(-2.8)
A 		6
B 4.8
(1.1)
A 		4.1
(0.5)
A 		0.4
(-2.8)
A 		6.9
(3)
A 		0.7
(-2.6)
A 		0.2
(-3)
A 		7
C 2.5
(-0.9)
A 		2.9
(-0.5)
A 		0.7
(-2.8)
A 		0.5
(-3)
A 		1.9
(-1.6)
A 		6.3
(3)
A 		6
avr 4.4
(3) 		2.5
(-0.9) 		1.5
(-3) 		4.1
(2.4) 		3
(0.1) 		2.4
(-1.1) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182865_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13184
Sequence Type Exemplar sequence
Representative Public ID R08H2.10 NCBI
Target Description R08H2.10 /REP_DB=WormBase Gene ID /WP=CE12612 /TR=O17992 /GB=CAB04635.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074414(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074414 NCBI Caenorhabditis elegans R08H2.10 (R08H2.10) mRNA, complete cds. 11/11 None
SNAP00000012523 ENSEMBL cdna:SNAP chromosome:CEL140:V:15376262:15377315:-1 9/11 None
R08H2.10 ENSEMBL cdna:known chromosome:CEL140:V:15376262:15376699:-1 gene:R08H2.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000012534 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15376261-15376699(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R08H2.10
Entrez Gene 187717 Entrez gene
SwissProt O17992 EMBL-EBI
WormBase CE12612 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04635 Hypothetical protein R08H2.10 [Caenorhabditis elegans] ref|NP_506815.1| R08H2.10 [Caenorhabditis elegans] 2.0E-60
blast CAB04635 Hypothetical protein R08H2.10 [Caenorhabditis elegans] ref|NP_506815.1| R08H2.10 [Caenorhabditis elegans] 2.0E-54
blast CAE71365 Hypothetical protein CBG18269 [Caenorhabditis briggsae] 7.0E-34
blast CAE71365 Hypothetical protein CBG18269 [Caenorhabditis briggsae] 2.0E-33
blast CAB04590 Hypothetical protein K08E3.2 [Caenorhabditis elegans] ref|NP_499837.1| K08E3.2 [Caenorhabditis elegans] 6.0E-26
blast CAB04590 Hypothetical protein K08E3.2 [Caenorhabditis elegans] ref|NP_499837.1| K08E3.2 [Caenorhabditis elegans] 9.0E-26
Protein Domains
Database ID Description E-Value
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 2.6E-30
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 9.3E-31
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506815.1 1 10-32
R08H2.10 1 10-32
Sequence
Target Sequence 
>C. ELEGANS:182865_AT
agcaccactcagtaggtgggatcatttttttttctaatagtttaattattttcattgcag
ttacggttgaccatgtgacgcttagttttgattgtgcaacaactagtcagaagaagatta
cattaaagaatgttaccagcagaccgataatgttcaagatcagatcgacgactactaata
cttatctgatcaatccagtgtttggaaaaatcgagcctaatggttcctttgaaatgattg
taactcaccgaccatctgccaagggagaacataagctggtgattatgacgactgaattgt
ctggaaaaaagattgaaatggcaaagacgtttaaacaaatcaagcaggctggccca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCACCACTCAGTAGGTGGGATCAT 111 77 20 Antisense
TTTTCATTGCAGTTACGGTTGACCA 708 671 68 Antisense
TACGGTTGACCATGTGACGCTTAGT 528 639 81 Antisense
GTGACGCTTAGTTTTGATTGTGCAA 345 483 94 Antisense
GTTACCAGCAGACCGATAATGTTCA 262 445 151 Antisense
CAGATCGACGACTACTAATACTTAT 371 205 180 Antisense
ATACTTATCTGATCAATCCAGTGTT 673 23 197 Antisense
AAATCGAGCCTAATGGTTCCTTTGA 27 117 227 Antisense
AATGATTGTAACTCACCGACCATCT 622 161 252 Antisense
TAAGCTGGTGATTATGACGACTGAA 380 637 291 Antisense
TAAACAAATCAAGCAGGCTGGCCCA 108 639 351 Antisense
Sequence Source Affymetrix Proprietary Database