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[182863_at]

Description F35D2.3 /REP_DB=WormBase Gene ID /WP=CE02725 /TR=Q20043 /GB=AAA68325.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 56      6grp_total > 47      4grp_total > 51      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 219
1 2 3 4 range
A 233.9
(-1.6)
M 		339.5
(3)
M 		261.6
(-0.4)
A 		202.5
(-3)
A 		137
B 228.5
(2.9)
M 		230.8
(3)
M 		229.8
(2.9)
A 		120.6
(-3)
A 		110
C 229.9
(-0.1)
P 		255.7
(3)
A 		205.2
(-3)
P 		209.4
(-2.5)
A 		51
avr 230.8
(0.3) 		275.3
(3) 		232.2
(0.4) 		177.5
(-3) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 219
1 2 3 4 5 6 range
A 378
(3)
P 		219.7
(-2.8)
P 		233.7
(-2.3)
P 		280.1
(-0.6)
P 		215
(-3)
M 		347.1
(1.9)
P 		163
B 375.9
(3)
P 		267.4
(-0.1)
P 		274
(0.1)
P 		271.9
(0)
P 		167.8
(-3)
P 		331.3
(1.7)
P 		208
C 319.2
(1.1)
P 		217.6
(-1.7)
P 		266.2
(-0.3)
M 		373.1
(2.6)
P 		168.8
(-3)
P 		386.7
(3)
P 		218
avr 357.7
(3) 		234.9
(-1.2) 		258
(-0.4) 		308.4
(1.3) 		183.9
(-3) 		355
(2.9) 		174
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 85.2
(3)
M 		73.7
(1.8)
M 		68.4
(1.2)
A 		29.6
(-3)
A 		56
B 72.9
(3)
M 		57
(1)
M 		53.2
(0.5)
A 		25.7
(-3)
A 		47
C 76.1
(3)
P 		73.5
(2.6)
A 		71.5
(2.3)
P 		35.3
(-3)
A 		41
avr 78.1
(3) 		68.1
(1.7) 		64.4
(1.3) 		30.2
(-3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 69.7
(0.4)
P 		78.1
(1.9)
P 		50.9
(-3)
P 		71
(0.6)
P 		64.9
(-0.5)
M 		84.5
(3)
P 		34
B 130.8
(3)
P 		89
(-0.9)
P 		66.5
(-3)
P 		72
(-2.5)
P 		68.2
(-2.8)
P 		123.6
(2.3)
P 		64
C 118.3
(2.1)
P 		66.4
(-2.1)
P 		67.7
(-1.9)
M 		75
(-1.4)
P 		54.6
(-3)
P 		129.4
(3)
P 		75
avr 106.3
(2.3) 		77.8
(-1.1) 		61.7
(-3) 		72.7
(-1.7) 		62.6
(-2.9) 		112.5
(3) 		51
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182863_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5023
Sequence Type Exemplar sequence
Representative Public ID F35D2.3 NCBI
Target Description F35D2.3 /REP_DB=WormBase Gene ID /WP=CE02725 /TR=Q20043 /GB=AAA68325.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063187(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063187 NCBI Caenorhabditis elegans F35D2.3 (F35D2.3) mRNA, complete cds. 10/11 None
SNAP00000006812 ENSEMBL cdna:SNAP chromosome:CEL140:II:7570878:7571960:1 10/11 None
GENEFINDER00000006820 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7570529:7571960:1 11/11 None
F35D2.3 ENSEMBL cdna:known chromosome:CEL140:II:7570527:7572354:1 gene:F35D2.3 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7570525-7571957(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F35D2.3
Entrez Gene 174229 Entrez gene
SwissProt Q20043 EMBL-EBI
WormBase CE31804 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA68325 Hypothetical protein F35D2.3 [Caenorhabditis elegans] ref|NP_495588.2| F35D2.3 [Caenorhabditis elegans] 1.0E-146
blast AAA68325 Hypothetical protein F35D2.3 [Caenorhabditis elegans] ref|NP_495588.2| F35D2.3 [Caenorhabditis elegans] 1.0E-144
blast CAE67491 Hypothetical protein CBG12999 [Caenorhabditis briggsae] 1.0E-141
blast CAE67491 Hypothetical protein CBG12999 [Caenorhabditis briggsae] 1.0E-137
blast AAA68325 Hypothetical protein F35D2.3 [Caenorhabditis elegans] ref|NP_495588.2| F35D2.3 [Caenorhabditis elegans] 1.0E-123
blast CAE67491 Hypothetical protein CBG12999 [Caenorhabditis briggsae] 1.0E-119
blast CAG01316 unnamed protein product [Tetraodon nigroviridis] 4.0E-19
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495588.2 1 211-233
F35D2.3 1 211-233
SNAP00000006812 1 197-219
GENEFINDER00000006820 1 216-238
Sequence
Target Sequence 
>C. ELEGANS:182863_AT
tggtggacgtaggcattccgccaaaggaacggtacgctgtcattgtccatatggactatc
tggggacagatgtgaaaaagttacgtactgtgaacccggaaaaggaaaattggttgaagg
aaaatgtgaatgcttcgagagatggacaggacttttctgtaatatgagaacatgcttcaa
cggtattccaactggtggactcgatggattctgtctttgtgatgttggatatactggacc
attctgtgatgctccactcatttgcgaaaacggcggttctgtaacacaggtaacaacgga
gaatgaatgtgcttgcactgccggatacactggagatcattgtgaacagtgtgcaatcgg
gtatatcaaggaggcacagtattgtgtgccagaggtcagtcgaaaggtggtatcggaatc
ttcacttcttgctcacacagcttcccttggaaaccgtccattcgcttggccaattatatt
aatgggatgtgcggctgcaattgctcttgtcgttcttgctctcaccgtcatctttgccgt
tcgaaaatggagcagcaaaccatctcgagtcaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGTGGACGTAGGCATTCCGCCAAA 436 553 195 Antisense
GGTACGCTGTCATTGTCCATATGGA 577 503 225 Antisense
GCTTCAACGGTATTCCAACTGGTGG 593 303 368 Antisense
ACTGGACCATTCTGTGATGCTCCAC 243 97 427 Antisense
TGCTCCACTCATTTGCGAAAACGGC 513 581 444 Antisense
CTTGCACTGCCGGATACACTGGAGA 212 219 506 Antisense
TGGTATCGGAATCTTCACTTCTTGC 518 551 602 Antisense
GTCCATTCGCTTGGCCAATTATATT 516 477 650 Antisense
TGGGATGTGCGGCTGCAATTGCTCT 596 553 677 Antisense
CCGTCATCTTTGCCGTTCGAAAATG 403 265 719 Antisense
AGCAGCAAACCATCTCGAGTCAATT 514 75 745 Antisense
Sequence Source Affymetrix Proprietary Database