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[182862_at]

Description T05E12.1 /REP_DB=WormBase Gene ID /WP=CE16346 /TR=O18027 /GB=CAB04681.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 18      6grp_cgc > 80      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.9
(-3)
A 		3.3
(-0.1)
A 		4.8
(3)
A 		4.7
(2.8)
A 		3
B 6.1
(3)
A 		5.6
(2)
A 		3.1
(-3)
A 		3.6
(-2)
A 		3
C 2.3
(-2.8)
A 		3.7
(-1.9)
A 		1.9
(-3)
A 		12
(3)
A 		10
avr 3.4
(-2.8) 		4.2
(-1.5) 		3.3
(-3) 		6.8
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 5
(3)
A 		3.4
(-0.2)
A 		3.9
(0.8)
A 		2.1
(-2.8)
A 		2.9
(-1.2)
A 		2
(-3)
A 		3
B 2.5
(-1.7)
A 		2.1
(-2.5)
A 		5.1
(3)
A 		2.5
(-1.7)
A 		2.6
(-1.5)
A 		1.8
(-3)
A 		3
C 2.5
(0.4)
A 		2.8
(1.5)
A 		2.8
(1.5)
A 		3.2
(3)
A 		1.6
(-3)
A 		2.1
(-1.1)
A 		2
avr 3.3
(1.1) 		2.8
(-0.5) 		3.9
(3) 		2.6
(-1.1) 		2.4
(-1.7) 		2
(-3) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 0.7
(-3)
A 		0.7
(-3)
A 		1.3
(3)
A 		0.7
(-3)
A 		1
B 2
(3)
A 		1.4
(0.2)
A 		0.7
(-3)
A 		0.8
(-2.5)
A 		1
C 0.8
(-2.5)
A 		1.1
(-1.2)
A 		0.7
(-3)
A 		2
(3)
A 		1
avr 1.2
(3) 		1.1
(1) 		0.9
(-3) 		1.2
(3) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.9
(0.4)
A 		1.2
(3)
A 		0.9
(0.4)
A 		0.5
(-3)
A 		0.9
(0.4)
A 		0.5
(-3)
A 		1
B 0.9
(-0.6)
A 		0.7
(-3)
A 		1.2
(3)
A 		0.7
(-3)
A 		1.1
(1.8)
A 		0.7
(-3)
A 		1
C 0.9
(3)
A 		0.9
(3)
A 		0.7
(-0)
A 		0.7
(-0)
A 		0.5
(-3)
A 		0.7
(-0)
A 		0
avr 0.9
(3) 		0.9
(3) 		0.9
(3) 		0.6
(-3) 		0.8
(1) 		0.6
(-3) 		0
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182862_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14635
Sequence Type Exemplar sequence
Representative Public ID T05E12.1 NCBI
Target Description T05E12.1 /REP_DB=WormBase Gene ID /WP=CE16346 /TR=O18027 /GB=CAB04681.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074922(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074922 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-125) (str-125) mRNA, complete cds. 11/11 None
SNAP00000044439 ENSEMBL cdna:SNAP chromosome:CEL140:V:17076868:17077862:-1 11/11 None
GENEFINDER00000044448 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17076868:17078578:-1 11/11 None
T05E12.1 ENSEMBL cdna:known chromosome:CEL140:V:17076868:17078578:-1 gene:T05E12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17076867-17078578(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol str-125
Ensembl T05E12.1
Entrez Gene 188134 Entrez gene
SwissProt O18027 EMBL-EBI
WormBase CE36191 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04681 Hypothetical protein T05E12.1 [Caenorhabditis elegans] ref|NP_507323.2| Seven TM Receptor family member (str-125) [Caenorhabditis elegans] 0.0
blast CAB04681 Hypothetical protein T05E12.1 [Caenorhabditis elegans] ref|NP_507323.2| Seven TM Receptor family member (str-125) [Caenorhabditis elegans] 1.0E-145
blast CAE57214 Hypothetical protein CBG00072 [Caenorhabditis briggsae] 8.0E-93
blast CAA90674 Hypothetical protein T22H6.3 [Caenorhabditis elegans] ref|NP_510134.1| Seven TM Receptor family member (str-124) [Caenorhabditis elegans] 2.0E-87
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.0E-126
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507323.2 7 5-27,40-62,86-108,128-150,199-221,247-269,284-306
T05E12.1 7 5-27,40-62,86-108,128-150,199-221,247-269,284-306
SNAP00000044439 5 10-32,52-74,123-145,171-193,208-230
GENEFINDER00000044448 7 5-27,40-62,86-108,128-150,199-221,247-269,284-306
Sequence
Target Sequence 
>C. ELEGANS:182862_AT
acctgtaccggaaactcaacttcattatcagtttgttcttaggaaaattttccgagaaag
tttcgatatggattcttttgacgtagcatttgtggctatgaaatacaagtcatctccgac
tgaatctatcccggaacattggaatatacaacaagtgtttggctttttattttgtgtagt
tataatgcagagctgtgtatttgccatattgttctgtggtcttcgcacatttttctacat
gaaaaagttcagcttcacaatgagccagaaaactaaggaacttcatcggcaacttttctt
cacacttactcttcagaccctactccctggtataactatgttcatcccagtgggaagcct
cattgcgttaccattttttggtgtggacttagggcttgaagtcaacaaaattggagcatt
tctcggagtatatcctgcgttggatccattgattgcaatttttttgatcactgattttcg
aaactttgttttatgtcttgaaaaacgcacggcgtacaaaattgccgcagggttgacggg
gattgagagctctacggca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCTGTACCGGAAACTCAACTTCAT 302 87 465 Antisense
TCATCTCCGACTGAATCTATCCCGG 276 619 574 Antisense
GCCATATTGTTCTGTGGTCTTCGCA 569 281 667 Antisense
GGTCTTCGCACATTTTTCTACATGA 583 503 682 Antisense
GGAACTTCATCGGCAACTTTTCTTC 686 527 741 Antisense
TTTTCTTCACACTTACTCTTCAGAC 278 677 758 Antisense
ACCCTACTCCCTGGTATAACTATGT 60 91 781 Antisense
ATAACTATGTTCATCCCAGTGGGAA 491 23 796 Antisense
AAGCCTCATTGCGTTACCATTTTTT 452 147 819 Antisense
TTCTCGGAGTATATCCTGCGTTGGA 620 691 884 Antisense
GACGGGGATTGAGAGCTCTACGGCA 507 377 999 Antisense
Sequence Source Affymetrix Proprietary Database