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[182860_at]

Description F08E10.5 /REP_DB=WormBase Gene ID /WP=CE18575 /TR=Q9XXP0 /GB=CAA16504.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 08      6grp_total_sub > Hat      6grp_cgc > 64      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 15
(-1.2)
A 		9.6
(-2)
A 		3.3
(-3)
A 		42.9
(3)
A 		40
B 4
(-3)
A 		4.5
(-2.9)
A 		24.5
(3)
A 		4.3
(-2.9)
A 		21
C 3.6
(-3)
A 		8.9
(-2.4)
A 		19.3
(-1.2)
A 		56.6
(3)
P 		53
avr 7.5
(-3) 		7.7
(-3) 		15.7
(-1.2) 		34.6
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 1.5
(-3)
A 		11.8
(-0)
A 		22.3
(3)
A 		2.5
(-2.7)
A 		10.3
(-0.5)
A 		6
(-1.7)
A 		21
B 3.3
(-3)
A 		21.9
(3)
A 		4.1
(-2.7)
A 		3.5
(-2.9)
A 		18.2
(1.8)
A 		3.7
(-2.9)
A 		19
C 4.8
(-2.9)
A 		23.3
(1.1)
A 		4.7
(-2.9)
A 		6.5
(-2.5)
A 		32.4
(3)
A 		4.3
(-3)
A 		28
avr 3.2
(-3) 		19
(2.5) 		10.4
(-0.5) 		4.2
(-2.6) 		20.3
(3) 		4.7
(-2.5) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 5.5
(2.1)
A 		2.1
(-1.7)
A 		0.9
(-3)
A 		6.3
(3)
A 		5
B 1.3
(-2.5)
A 		1.1
(-2.8)
A 		5.7
(3)
A 		0.9
(-3)
A 		5
C 1.2
(-3)
A 		2.6
(-2)
A 		6.7
(1)
A 		9.5
(3)
P 		8
avr 2.7
(-1.7) 		1.9
(-3) 		4.4
(1.1) 		5.6
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.3
(-3)
A 		4.2
(2.1)
A 		4.9
(3)
A 		0.6
(-2.6)
A 		3.1
(0.7)
A 		1.5
(-1.4)
A 		5
B 1.2
(-2.7)
A 		7.3
(2.9)
A 		1
(-2.9)
A 		0.9
(-3)
A 		7.4
(3)
A 		1.4
(-2.5)
A 		7
C 1.8
(-2.6)
A 		7.1
(0.8)
A 		1.2
(-3)
A 		1.3
(-2.9)
A 		10.5
(3)
A 		1.4
(-2.9)
A 		9
avr 1.1
(-2.8) 		6.2
(2.2) 		2.4
(-1.5) 		0.9
(-3) 		7
(3) 		1.4
(-2.5) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182860_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12690
Sequence Type Exemplar sequence
Representative Public ID F08E10.5 NCBI
Target Description F08E10.5 /REP_DB=WormBase Gene ID /WP=CE18575 /TR=Q9XXP0 /GB=CAA16504.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074961
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F08E10.5 ENSEMBL cdna:pseudogene chromosome:CEL140:V:17483427:17484431:-1 gene:F08E10.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17483426-17484431(-) 100.0 100.0
chrV:17224946-17225975(-) 93.03 93.03
Public Domain and Genome References
Ensembl F08E10.5
Sequence
Target Sequence 
>C. ELEGANS:182860_AT
agactctctctggcattacatgagaaaaatctatttaccactgatgtacatattcccgct
caccttcacactgccaatctgggcagttatgccaatacaggaaaacgctcgcccatgcga
tgaagctttacaactagaaaatattcacatggaatcgaagaaaatattcattatatccgt
cgatccaataatttcagtcacttggggtgtgactaattgtatactcatcgttacacctat
cataacgttcttacaacttctcgaaaaccaaaaaacacacaaatactcctaccaaacaat
tcaacttcagaagactttcttattgtccatgtcagtacaattcggctcttttttcgttat
catttttattcctgtgcttcttttgcacggctccgtcatattctggtatcatgatcaagt
tcttaacaactttatcacaatcatgttttcatcattcggaactggatccacagtagtgat
gattctagtttacaaaccgtacaggcggtttacgttttcaggttgcaacaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGACTCTCTCTGGCATTACATGAGA 612 71 351 Antisense
AACGCTCGCCCATGCGATGAAGCTT 36 147 454 Antisense
CATAACGTTCTTACAACTTCTCGAA 284 213 591 Antisense
TACTCCTACCAAACAATTCAACTTC 534 643 634 Antisense
AGACTTTCTTATTGTCCATGTCAGT 544 71 662 Antisense
GTCCATGTCAGTACAATTCGGCTCT 541 475 675 Antisense
ATTCGGCTCTTTTTTCGTTATCATT 459 9 690 Antisense
ATCATTTTTATTCCTGTGCTTCTTT 336 31 709 Antisense
TCTTTTGCACGGCTCCGTCATATTC 371 615 729 Antisense
GGCTCCGTCATATTCTGGTATCATG 114 539 739 Antisense
GTTTACGTTTTCAGGTTGCAACAAG 600 449 858 Antisense
Sequence Source Affymetrix Proprietary Database