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[182859_at]

Description C30E1.5 /REP_DB=WormBase Gene ID /WP=CE08472 /TR=O17333 /GB=AAB71250.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 24      4grp_total > 14      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 49.2
(-0.1)
A 		10.7
(-3)
A 		46.1
(-0.4)
A 		91.1
(3)
A 		80
B 49.9
(2.2)
A 		27.8
(-3)
A 		53.5
(3)
A 		31
(-2.3)
A 		26
C 82.7
(2.4)
A 		57.3
(0.3)
A 		18.8
(-3)
A 		89.3
(3)
A 		71
avr 60.6
(1.5) 		31.9
(-3) 		39.5
(-1.8) 		70.5
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 83.3
(3)
A 		56.4
(1)
A 		42.7
(-0)
A 		33.5
(-0.7)
A 		3.1
(-3)
A 		2.7
(-3)
A 		81
B 78.1
(3)
A 		34.4
(-0.5)
A 		47.7
(0.6)
A 		2.6
(-3)
A 		36.1
(-0.3)
A 		41.2
(0.1)
A 		76
C 65.1
(2.2)
A 		73.6
(3)
A 		56.4
(1.3)
A 		68.2
(2.5)
A 		21.7
(-2)
A 		11.2
(-3)
A 		62
avr 75.5
(3) 		54.8
(0.8) 		48.9
(0.2) 		34.8
(-1.3) 		20.3
(-2.8) 		18.4
(-3) 		57
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 17.9
(3)
A 		2.3
(-3)
A 		12
(0.7)
A 		13.3
(1.2)
A 		16
B 15.9
(3)
A 		6.9
(-2.8)
A 		12.4
(0.7)
A 		6.6
(-3)
A 		9
C 27.4
(3)
A 		16.5
(-0.1)
A 		6.5
(-3)
A 		15.1
(-0.5)
A 		21
avr 20.4
(3) 		8.6
(-3) 		10.3
(-2.1) 		11.7
(-1.4) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 15.4
(1.6)
A 		20.1
(3)
A 		9.3
(-0.3)
A 		8.5
(-0.6)
A 		0.9
(-2.9)
A 		0.6
(-3)
A 		20
B 27.2
(3)
A 		11.4
(-0.6)
A 		11.6
(-0.5)
A 		0.7
(-3)
A 		14.7
(0.2)
A 		15.4
(0.3)
A 		27
C 24.1
(3)
A 		22.5
(2.5)
A 		14.4
(0.1)
A 		13.7
(-0.1)
A 		7
(-2)
A 		3.7
(-3)
A 		20
avr 22.2
(3) 		18
(1.4) 		11.8
(-1) 		7.6
(-2.6) 		7.5
(-2.7) 		6.6
(-3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182859_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17401
Sequence Type Exemplar sequence
Representative Public ID C30E1.5 NCBI
Target Description C30E1.5 /REP_DB=WormBase Gene ID /WP=CE08472 /TR=O17333 /GB=AAB71250.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078337(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078337 NCBI Caenorhabditis elegans C30E1.5 (C30E1.5) mRNA, complete cds. 11/11 None
SNAP00000041126 ENSEMBL cdna:SNAP chromosome:CEL140:X:16921766:16922774:1 11/11 None
GENEFINDER00000041129 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16921766:16927681:1 11/11 None
C30E1.5 ENSEMBL cdna:known chromosome:CEL140:X:16921766:16922774:1 gene:C30E1.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16921765-16922774(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C30E1.5
Entrez Gene 183048 Entrez gene
SwissProt O17333 EMBL-EBI
WormBase CE08472 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71250 Hypothetical protein C30E1.5 [Caenorhabditis elegans] ref|NP_510738.1| C30E1.5 [Caenorhabditis elegans] 0.0
blast CAE56315 Hypothetical protein CBG23978 [Caenorhabditis briggsae] 1.0E-150
blast CAA19499 Hypothetical protein Y37H2C.1 [Caenorhabditis elegans] ref|NP_507576.1| Y37H2C.1 [Caenorhabditis elegans] 1.0E-150
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000041129 9 537-559,615-637,663-685,711-728,733-755,767-786,791-813,854-873,877-899
Sequence
Target Sequence 
>C. ELEGANS:182859_AT
gaatcacccatttgaagttctacgcgaacaacacttttaatgttcattccgttagaaatt
gcctaagaggacatattattgagcaatttgtaattgatgtcaattgtcgaaacattgaag
aaattatttctgcatttcccgagatacagtctttaaccttgcatcaccaatcaagagatc
tggtgaggttgaaatcagtatggactccggaaatgttccgcatggcttctgttaagcttg
tcagagttgctatacacctcgaagaagtcctagacttggatttgagttgtgggcgatttt
ggaactctcacctcaccaatcaagatatcaatacgttttttaaaaaatgggccaatggat
ggaaccgtaatctgcaatgcatttgccttgaatacgatgatgtggaactagagttcaagg
aacctgtcatttttcgtggaatcgattatcaacggttgacaaaggcggcagcacgtttat
tgaactgtgagctgctaccagaaattatgggctacgaatcgcttaacggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCACCCATTTGAAGTTCTACGC 698 327 356 Antisense
TTATTTCTGCATTTCCCGAGATACA 63 679 479 Antisense
TACAGTCTTTAACCTTGCATCACCA 596 643 500 Antisense
ATGTTCCGCATGGCTTCTGTTAAGC 563 45 568 Antisense
GTTGCTATACACCTCGAAGAAGTCC 524 439 601 Antisense
GTGGGCGATTTTGGAACTCTCACCT 432 487 644 Antisense
ACTCTCACCTCACCAATCAAGATAT 96 101 659 Antisense
GGATGGAACCGTAATCTGCAATGCA 280 515 712 Antisense
GGAACCTGTCATTTTTCGTGGAATC 340 529 774 Antisense
AAGGCGGCAGCACGTTTATTGAACT 191 159 817 Antisense
ATGGGCTACGAATCGCTTAACGGAG 68 3 862 Antisense
Sequence Source Affymetrix Proprietary Database