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[182858_at]

Description T15B7.9 /REP_DB=WormBase Gene ID /WP=CE13662 /TR=O17042 /GB=AAB69964.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 41      4grp_total > 61      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 324
1 2 3 4 range
A 309.2
(3)
P 		184.2
(0.4)
P 		222.7
(1.2)
M 		19.4
(-3)
A 		290
B 292
(3)
P 		221.5
(1.5)
P 		235.7
(1.8)
P 		11.4
(-3)
A 		281
C 335.3
(3)
P 		266.3
(1.7)
P 		274.5
(1.9)
P 		15.3
(-3)
A 		320
avr 312.2
(3) 		224
(1.2) 		244.3
(1.6) 		15.4
(-3) 		297

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 433
1 2 3 4 5 6 range
A 75.1
(-2.6)
A 		270.2
(0.2)
P 		460.9
(3)
P 		325.4
(1)
P 		217
(-0.5)
P 		48
(-3)
A 		413
B 247.8
(-0.5)
P 		285.5
(0)
P 		480.9
(3)
P 		309.6
(0.4)
P 		226.3
(-0.9)
P 		84.6
(-3)
A 		396
C 322.7
(1.4)
P 		355.8
(2)
P 		414.3
(3)
P 		348.4
(1.8)
P 		246.9
(0)
P 		76.5
(-3)
A 		338
avr 215.2
(-0.7) 		303.8
(0.7) 		452
(3) 		327.8
(1.1) 		230.1
(-0.5) 		69.7
(-3) 		382
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 110
1 2 3 4 range
A 112.6
(3)
P 		40
(-1)
P 		58.2
(0)
M 		2.8
(-3)
A 		110
B 93.1
(3)
P 		54.7
(0.5)
P 		54.6
(0.5)
P 		2.4
(-3)
A 		91
C 111
(3)
P 		76.6
(1.1)
P 		95.7
(2.2)
P 		2.6
(-3)
A 		108
avr 105.6
(3) 		57.1
(0.2) 		69.5
(0.9) 		2.6
(-3) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 13.8
(-2.9)
A 		96.1
(2.7)
P 		100.4
(3)
P 		82.5
(1.8)
P 		65.5
(0.6)
P 		11.7
(-3)
A 		89
B 86.2
(0.8)
P 		95
(1.5)
P 		116.8
(3)
P 		82
(0.6)
P 		91.9
(1.2)
P 		31.5
(-3)
A 		85
C 119.6
(3)
P 		108.6
(2.3)
P 		105.4
(2.1)
P 		70.1
(-0.2)
P 		79.9
(0.5)
P 		25.6
(-3)
A 		94
avr 73.2
(0.6) 		99.9
(2.5) 		107.5
(3) 		78.2
(0.9) 		79.1
(1) 		22.9
(-3) 		85
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182858_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11861
Sequence Type Exemplar sequence
Representative Public ID T15B7.9 NCBI
Target Description T15B7.9 /REP_DB=WormBase Gene ID /WP=CE13662 /TR=O17042 /GB=AAB69964.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072342(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072342 NCBI Caenorhabditis elegans T15B7.1 (T15B7.1) mRNA, complete cds. 9/11 None
SNAP00000035394 ENSEMBL cdna:SNAP chromosome:CEL140:V:6845405:6848979:1 9/11 None
GENEFINDER00000035401 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6845405:6848979:1 9/11 None
T15B7.1 ENSEMBL cdna:known chromosome:CEL140:V:6845387:6849246:1 gene:T15B7.1 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6845405-6846350(+) 61.28 100.0
Public Domain and Genome References
Gene Title
Ensembl T15B7.1
Entrez Gene 188512 Entrez gene
SwissProt Q5ZR75 EMBL-EBI
WormBase CE37677 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.22092.1.S1_S_AT similar to tenascin R (restrictin, janusin) cfa
CHICKEN:GGA.711.1.S1_AT tenascin R (restrictin, janusin) gga
HG-U133_PLUS_2:206990_AT tenascin R (restrictin, janusin) hs
HG-U133A_2:206990_AT tenascin R (restrictin, janusin) hs
HG-U133A:206990_AT tenascin R (restrictin, janusin) hs
HG-FOCUS:206990_AT tenascin R (restrictin, janusin) hs
HUGENEFL:X98085_AT tenascin R (restrictin, janusin) hs
U133_X3P:G4507630_3P_AT tenascin R (restrictin, janusin) hs
HG-U95AV2:34598_AT tenascin R (restrictin, janusin) hs
MG-U74CV2:135907_AT Tenascin R (Tnr), mRNA mm
RG-U34A:Z18630_AT tenascin R rn
RAE230A:1369692_AT tenascin R rn
RAT230_2:1369692_AT tenascin R rn
Protein Similarities
Method ID Description E-Value
blast AAV28323 Hypothetical protein T15B7.1 [Caenorhabditis elegans] ref|NP_504743.2| T15B7.1 [Caenorhabditis elegans] 0.0
blast AAV28323 Hypothetical protein T15B7.1 [Caenorhabditis elegans] ref|NP_504743.2| T15B7.1 [Caenorhabditis elegans] 1.0E-164
blast T32255 hypothetical protein T15B7.1 - Caenorhabditis elegans 6.0E-87
blast T32255 hypothetical protein T15B7.1 - Caenorhabditis elegans 8.0E-87
blast T32255 hypothetical protein T15B7.1 - Caenorhabditis elegans 9.0E-87
blast CAE71963 Hypothetical protein CBG19033 [Caenorhabditis briggsae] 4.0E-78
Protein Domains
Database ID Description E-Value
Pfam IPR002181 EMBL-EBI Fibrinogen, beta/gamma chain, C-terminal globular 3.9E-29
Pfam IPR001304 EMBL-EBI C-type lectin 8.7E-10
Pfam IPR002181 EMBL-EBI Fibrinogen, beta/gamma chain, C-terminal globular 3.9E-29
Pfam IPR001304 EMBL-EBI C-type lectin 2.2E-10
Pfam IPR002181 EMBL-EBI Fibrinogen, beta/gamma chain, C-terminal globular 3.6E-26
Sequence
Target Sequence 
>C. ELEGANS:182858_AT
ctttctgtcgtttgctattttctgagtgtttttaatgtgatcgacgcggattgtgcaccc
ggagatgtgaagaatacccaggaaaactgtgttcacgtggagaatttggctgcaacctgg
caagaagctgaaaacttctgcacagctcataatggacacttggcttcggtgcacaatgcg
ttcgacatgacatctttgagaaaagtggccggagtttgctcatcattttggcttggagga
caatgtcaaaaaggatcaaattgcaattggatagatggaactagttttgactattccaat
ttcagaaatggaaattctggaaccgataattgcattgttgcagatacaaaatcaggcatt
tttctgatctcgcttcttttaagctttgaattgaggcttgttttgctttgtttagaatac
attattagaaaacgacaaaattttgaaaaaaaatccgtccgaaaaattttttttggtgat
cgtcaaaaaatcttcaaaaaactttttgtcgaaaattctagattttttatacaaaaacct
gccgtggaccgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTTCTGTCGTTTGCTATTTTCTGA 340 223 22 Antisense
TGTGATCGACGCGGATTGTGCACCC 384 555 57 Antisense
ACCCAGGAAAACTGTGTTCACGTGG 413 85 97 Antisense
GAATTTGGCTGCAACCTGGCAAGAA 683 325 123 Antisense
ACTTCTGCACAGCTCATAATGGACA 185 103 155 Antisense
TAATGGACACTTGGCTTCGGTGCAC 369 637 171 Antisense
GGTGCACAATGCGTTCGACATGACA 551 499 189 Antisense
AAGTGGCCGGAGTTTGCTCATCATT 566 159 224 Antisense
AGTTTGCTCATCATTTTGGCTTGGA 413 63 234 Antisense
TTGAGGCTTGTTTTGCTTTGTTTAG 161 707 412 Antisense
TATACAAAAACCTGCCGTGGACCGC 71 635 549 Antisense
Sequence Source Affymetrix Proprietary Database