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[182857_at]

Description W03B1.8 /REP_DB=WormBase Gene ID /WP=CE14502 /TR=O45884 /GB=AAC24440.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 35      4grp_total > 47      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 130
1 2 3 4 range
A 130.1
(3)
A 		48.7
(-0.9)
A 		11.6
(-2.7)
A 		5.8
(-3)
A 		124
B 123.2
(3)
P 		6.5
(-2.8)
A 		9.2
(-2.6)
A 		2.1
(-3)
A 		121
C 132.5
(3)
A 		10.7
(-3)
A 		25.4
(-2.3)
A 		28.9
(-2.1)
A 		122
avr 128.6
(3) 		22
(-2.5) 		15.4
(-2.8) 		12.3
(-3) 		116

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 39.7
(3)
A 		3.8
(-2.8)
A 		8.2
(-2.1)
A 		2.8
(-3)
A 		3.9
(-2.8)
A 		8.4
(-2.1)
A 		37
B 3.6
(-2.7)
A 		25.1
(3)
A 		3.7
(-2.7)
A 		2.4
(-3)
A 		3.4
(-2.7)
A 		4
(-2.6)
A 		23
C 9
(-1.2)
A 		16.2
(0.6)
A 		25.8
(3)
A 		4.9
(-2.2)
A 		1.6
(-3)
A 		4.7
(-2.2)
A 		24
avr 17.4
(3) 		15
(2) 		12.6
(1) 		3.4
(-2.8) 		3
(-3) 		5.7
(-1.9) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 47.4
(3)
A 		10.6
(-1.7)
A 		3
(-2.7)
A 		0.8
(-3)
A 		47
B 39.3
(3)
P 		1.6
(-2.8)
A 		2.1
(-2.7)
A 		0.4
(-3)
A 		39
C 43.9
(3)
A 		3.1
(-3)
A 		8.8
(-2.2)
A 		4.9
(-2.7)
A 		41
avr 43.5
(3) 		5.1
(-2.6) 		4.6
(-2.6) 		2
(-3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 7.3
(3)
A 		1.4
(-2.4)
A 		1.8
(-2)
A 		0.7
(-3)
A 		1.2
(-2.5)
A 		2
(-1.8)
A 		7
B 1.2
(-2.5)
A 		8.4
(3)
A 		0.9
(-2.8)
A 		0.6
(-3)
A 		1.4
(-2.4)
A 		1.5
(-2.3)
A 		8
C 3.3
(-0.2)
A 		4.9
(1.3)
A 		6.6
(3)
A 		1
(-2.5)
A 		0.5
(-3)
A 		1.6
(-1.9)
A 		6
avr 3.9
(1.5) 		4.9
(3) 		3.1
(0.4) 		0.8
(-3) 		1
(-2.7) 		1.7
(-1.7) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182857_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10989
Sequence Type Exemplar sequence
Representative Public ID W03B1.8 NCBI
Target Description W03B1.8 /REP_DB=WormBase Gene ID /WP=CE14502 /TR=O45884 /GB=AAC24440.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068145(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068145 NCBI Caenorhabditis elegans W03B1.8 (W03B1.8) mRNA, complete cds. 11/11 None
SNAP00000035759 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4342350:4345025:-1 9/11 None
GENEFINDER00000035767 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4342350:4347077:-1 9/11 None
W03B1.8 ENSEMBL cdna:known chromosome:CEL140:IV:4342023:4346551:-1 gene:W03B1.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4342028-4346557(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W03B1.8
Entrez Gene 189147 Entrez gene
SwissProt O45884 EMBL-EBI
WormBase CE14502 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16747 transferase activity, transferring groups other than amino-acyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC24440 Hypothetical protein W03B1.8 [Caenorhabditis elegans] ref|NP_500546.1| W03B1.8 [Caenorhabditis elegans] 0.0
blast CAE65658 Hypothetical protein CBG10723 [Caenorhabditis briggsae] 0.0
blast AAO91724 Hypothetical protein F37C4.2 [Caenorhabditis elegans] ref|NP_500432.3| F37C4.2 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 1.0E-126
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 9.6E-53
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500546.1 9 21-43,81-100,145-167,172-191,198-215,264-286,307-326,341-360,367-389
W03B1.8 9 21-43,81-100,145-167,172-191,198-215,264-286,307-326,341-360,367-389
SNAP00000035759 4 56-78,103-125,132-154,164-181
GENEFINDER00000035767 8 209-228,279-296,301-323,327-344,393-415,440-462,469-491,501-518
Sequence
Target Sequence 
>C. ELEGANS:182857_AT
tatggttgtgaagctctttatccgagcacattcaaccgggatttgtgcagacaaaacttc
acacattttgcagaacggattaaaaatgagaaaccggattatgcatttatttttacacgg
tacatgtcaatcggtgcgccatttcccagaaacgtcacaaatttcaatgacgacccaatc
taccagataatgaaaacccaaatgctgaacttcatttcaaatattaaatacaaactctac
atcctagatgccttgcctaatatcaaacggaaaagcattgacaatattgttccgttgata
aggaatcatacggattttgcagatattgataacactgtaatcaaacttggtgactacgaa
atggctcgaaaaagatatgatcaacttgtgaaggattgtaatggaaaatgtgttttagtg
gattacctgccagaattctataacaactcaactggaacattccgttattttgacgacaag
ggatttgcgtattggacagagtcgttacatttatcacctcatggaatagagcacattcgg
catgtttggaaggatatatgctccaaactgaacctcgcagcatttgttttgttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATGGTTGTGAAGCTCTTTATCCGA 493 655 1501 Antisense
CCGAGCACATTCAACCGGGATTTGT 282 263 1522 Antisense
CACGGTACATGTCAATCGGTGCGCC 138 199 1616 Antisense
CGCCATTTCCCAGAAACGTCACAAA 57 257 1637 Antisense
TCAATGACGACCCAATCTACCAGAT 199 633 1664 Antisense
AACTCTACATCCTAGATGCCTTGCC 437 139 1733 Antisense
GATGCCTTGCCTAATATCAAACGGA 395 415 1747 Antisense
TAACAACTCAACTGGAACATTCCGT 579 627 1941 Antisense
GAGTCGTTACATTTATCACCTCATG 113 401 1999 Antisense
GATATATGCTCCAAACTGAACCTCG 148 427 2053 Antisense
GAACCTCGCAGCATTTGTTTTGTTG 690 345 2070 Antisense
Sequence Source Affymetrix Proprietary Database