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[182855_at]

Description T07C12.5 /REP_DB=WormBase Gene ID /WP=CE06387 /TR=Q22281 /GB=CAA98284.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 03      6grp_cgc > 65      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 13.1
(-2.3)
A 		3.8
(-3)
A 		3.5
(-3)
A 		83.8
(3)
A 		80
B 4
(-2.3)
A 		1.6
(-3)
A 		4.4
(-2.2)
A 		21.9
(3)
A 		20
C 25.6
(-2.3)
A 		17.3
(-3)
A 		22.3
(-2.6)
A 		88.6
(3)
A 		71
avr 14.2
(-2.3) 		7.6
(-3) 		10.1
(-2.7) 		64.8
(3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 1.6
(-2.9)
A 		3.4
(-2.6)
A 		25.1
(1.3)
A 		1.1
(-3)
A 		34.9
(3)
A 		2.2
(-2.8)
A 		34
B 15.9
(3)
A 		14.5
(2.4)
A 		0.8
(-3)
A 		10
(0.7)
A 		0.9
(-3)
A 		13.6
(2.1)
A 		15
C 1.9
(-2.9)
A 		28.6
(3)
A 		17.5
(0.5)
A 		25.9
(2.4)
A 		1.6
(-3)
A 		21.2
(1.4)
A 		27
avr 6.5
(-3) 		15.5
(3) 		14.5
(2.3) 		12.3
(0.9) 		12.5
(1) 		12.3
(0.9) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 4.8
(-0.9)
A 		0.8
(-3)
A 		0.9
(-2.9)
A 		12.3
(3)
A 		12
B 1.3
(-1.7)
A 		0.4
(-3)
A 		1
(-2.2)
A 		4.7
(3)
A 		4
C 8.5
(-0.9)
A 		5
(-3)
A 		7.8
(-1.3)
A 		14.9
(3)
A 		10
avr 4.9
(-1) 		2.1
(-3) 		3.2
(-2.2) 		10.6
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.3
(-3)
A 		1.2
(-2.5)
A 		5.5
(0.1)
A 		0.3
(-3)
A 		10.5
(3)
A 		0.5
(-2.9)
A 		10
B 5.5
(3)
A 		4.8
(2.2)
A 		0.2
(-3)
A 		2.7
(-0.2)
A 		0.4
(-2.8)
A 		5.1
(2.5)
A 		5
C 0.7
(-2.9)
A 		8.7
(3)
A 		4.4
(-0.1)
A 		5.2
(0.4)
A 		0.5
(-3)
A 		7.1
(1.8)
A 		8
avr 2.2
(-3) 		4.9
(3) 		3.4
(-0.3) 		2.7
(-1.9) 		3.8
(0.6) 		4.2
(1.4) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182855_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11575
Sequence Type Exemplar sequence
Representative Public ID T07C12.5 NCBI
Target Description T07C12.5 /REP_DB=WormBase Gene ID /WP=CE06387 /TR=Q22281 /GB=CAA98284.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T07C12.5 ENSEMBL cdna:pseudogene chromosome:CEL140:V:9944273:9945581:-1 gene:T07C12.5 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9944272-9945581(-) 79.86 100.0
Public Domain and Genome References
Ensembl T07C12.5
Sequence
Target Sequence 
>C. ELEGANS:182855_AT
attctactccattgtgaccatagtcgtaccaatagacatacacaccaggggtgtgcggca
aatttgccgaatttgccgaatttgccgagcacggcaaatttcaaaaaagtagatttgccg
aatttgccgagctcggcaaatttcgaaatttgccgcacacgtcaaaaatttgacagtaca
attttgactaaaactgttgattttttcgccaaaaatttagaagcatcagacgacgttatc
ataagatcttggatagcagttgcaggaatttcattattttctattgatttatatgcaatc
ttcggctttttgacaatgagcaaactgaccgaaaacacgttacatatgagtaaaaccaca
acaaccattcaaaaagctcttcttaaagctttaattgtccagacaattataccgattttt
gtcattttttccccatgtattctttgttggttcagtccaattttcaacattaatcttgga
agaggatttaactatcttgaagtattggcactttcagcatttccattttttgatccattg
gccattattctctgtcttcctccactccggaaacgtgttctcttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCTACTCCATTGTGACCATAGTC 372 11 247 Antisense
GTCGTACCAATAGACATACACACCA 655 471 269 Antisense
TTAGAAGCATCAGACGACGTTATCA 627 681 463 Antisense
ATATGCAATCTTCGGCTTTTTGACA 106 21 537 Antisense
ACAACAACCATTCAAAAAGCTCTTC 17 113 604 Antisense
TTGTCCAGACAATTATACCGATTTT 86 703 641 Antisense
TTGTCATTTTTTCCCCATGTATTCT 372 705 665 Antisense
ATGTATTCTTTGTTGGTTCAGTCCA 54 47 681 Antisense
GGCACTTTCAGCATTTCCATTTTTT 252 535 753 Antisense
TGATCCATTGGCCATTATTCTCTGT 697 565 777 Antisense
CCACTCCGGAAACGTGTTCTCTTCA 90 273 808 Antisense
Sequence Source Affymetrix Proprietary Database