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[182854_at]

Description T15B7.2 /REP_DB=WormBase Gene ID /WP=CE13650 /TR=O17040 /GB=AAB69975.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 27      6grp_high1_10_10 > 62      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 28      6grp_total > 62      4grp_total > 59      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4624
1 2 3 4 range
A 5543.2
(0.8)
P 		7189.3
(3)
P 		7130.8
(2.9)
P 		2710.7
(-3)
P 		4479
B 5745.7
(0.9)
P 		6381.4
(1.7)
P 		7334.4
(3)
P 		2854.2
(-3)
P 		4480
C 5190.6
(0.6)
P 		6540.8
(2.7)
P 		6730.6
(3)
P 		2895
(-3)
P 		3836
avr 5493.2
(0.8) 		6703.8
(2.5) 		7065.3
(3) 		2820
(-3) 		4245

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7854
1 2 3 4 5 6 range
A 7543.9
(-2.3)
P 		8448.9
(-1.5)
P 		12769.6
(2.2)
P 		13724.9
(3)
P 		9126.5
(-0.9)
P 		6711.9
(-3)
P 		7013
B 6071.9
(-2.8)
P 		8084.9
(-1.2)
P 		13207.5
(3)
P 		12674.6
(2.6)
P 		8815.4
(-0.6)
P 		5871.4
(-3)
P 		7336
C 6331.5
(-3)
P 		7642.8
(-1.9)
P 		13590.9
(3)
P 		13319.1
(2.8)
P 		10055.6
(0.1)
P 		6609.5
(-2.8)
P 		7259
avr 6649.1
(-2.8) 		8058.9
(-1.5) 		13189.3
(3) 		13239.5
(3) 		9332.5
(-0.4) 		6397.6
(-3) 		6842
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1949
1 2 3 4 range
A 2018.3
(3)
P 		1560.6
(1.3)
P 		1864.1
(2.4)
P 		396.8
(-3)
P 		1622
B 1832.3
(3)
P 		1576.1
(1.7)
P 		1699.5
(2.3)
P 		608.2
(-3)
P 		1224
C 1718.2
(1)
P 		1880.5
(1.5)
P 		2345.8
(3)
P 		488.1
(-3)
P 		1858
avr 1856.3
(2.5) 		1672.4
(1.8) 		1969.8
(3) 		497.7
(-3) 		1472

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2191
1 2 3 4 5 6 range
A 1390.6
(-3)
P 		3004.8
(1.6)
P 		2780.9
(1)
P 		3481
(3)
P 		2754
(0.9)
P 		1634.1
(-2.3)
P 		2090
B 2112.7
(-3)
P 		2691.1
(-0.6)
P 		3207.2
(1.5)
P 		3357.1
(2.1)
P 		3581.6
(3)
P 		2189.4
(-2.7)
P 		1469
C 2346.8
(-2.4)
P 		2332.1
(-2.4)
P 		3459.1
(3)
P 		2678.5
(-0.8)
P 		3253.8
(2)
P 		2212.6
(-3)
P 		1247
avr 1950
(-3) 		2676
(0.5) 		3149.1
(2.8) 		3172.2
(2.9) 		3196.5
(3) 		2012
(-2.7) 		1247
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182854_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11811
Sequence Type Exemplar sequence
Representative Public ID T15B7.2 NCBI
Target Description T15B7.2 /REP_DB=WormBase Gene ID /WP=CE13650 /TR=O17040 /GB=AAB69975.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072339(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072339 NCBI Caenorhabditis elegans T15B7.2 (T15B7.2) mRNA, complete cds. 10/11 None
SNAP00000035392 ENSEMBL cdna:SNAP chromosome:CEL140:V:6841890:6842757:1 10/11 None
GENEFINDER00000035399 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6841890:6842757:1 10/11 None
T15B7.2.1 ENSEMBL cdna:known chromosome:CEL140:V:6841850:6842838:1 gene:T15B7.2 10/11 None
T15B7.2.2 ENSEMBL cdna:known chromosome:CEL140:V:6841883:6842837:1 gene:T15B7.2 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6841890-6843081(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T15B7.2
Entrez Gene 188513 Entrez gene
SwissProt O17040 EMBL-EBI
WormBase CE33319 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:250428_AT protein tyrosine phosphatase-like protein, putative (PAS2) at
CANINE_2:CFAAFFX.18767.1.S1_AT similar to protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b cfa
DROSOPHILA_2:1630398_AT dm
DROSGENOME1:152090_AT dm
CHICKEN:GGA.12481.1.S1_S_AT protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b gga
CHICKEN:GGAAFFX.20494.1.S1_S_AT protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b gga
HU35KSUBA:T74445_AT protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b hs
HU35KSUBA:RC_AA417761_AT protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b hs
U133_X3P:HS.5957.0.S1_3P_AT protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b hs
U133_X3P:HS.127478.0.A1_3P_AT protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b hs
HG-U133A_2:212640_AT protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b hs
HG-U133_PLUS_2:212640_AT protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b hs
HG-U133A:212640_AT protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b hs
HG-U133_PLUS_2:227741_AT protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b hs
HG-U133B:227741_AT protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b hs
HG-U95AV2:35342_AT protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b hs
HG-U95E:76489_AT protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b hs
HG-U95D:89971_R_AT protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b hs
HG-U95C:60412_AT Protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b hs
HG-U95D:81918_R_AT Protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b hs
HG-U95D:87443_AT Protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b hs
HU35KSUBC:RC_N90168_AT Protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b hs
MOUSE430A_2:1449342_AT protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b mm
MOE430A:1449342_AT protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b mm
MOUSE430_2:1449342_AT protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b mm
MG-U74BV2:107993_AT protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b mm
MG-U74BV2:107553_AT protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b mm
MG-U74CV2:165617_AT Protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b, mRNA (cDNA clone MGC:6798 IMAGE:2647850) mm
MOE430B:1437329_AT Protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b, mRNA (cDNA clone MGC:6798 IMAGE:2647850) mm
MOUSE430_2:1437329_AT Protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b, mRNA (cDNA clone MGC:6798 IMAGE:2647850) mm
MOE430B:1458727_AT Protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b, mRNA (cDNA clone MGC:6798 IMAGE:2647850) mm
MOUSE430_2:1458727_AT Protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b, mRNA (cDNA clone MGC:6798 IMAGE:2647850) mm
MU19KSUBC:TC37488_AT Protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b, mRNA (cDNA clone MGC:6798 IMAGE:2647850) mm
RG-U34C:RC_AI176548_AT protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b (predicted) rn
RAE230A:1374393_AT protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b (predicted) rn
RAT230_2:1374393_AT protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b (predicted) rn
YEAST_2:1769703_AT Protein of unknown function; homolog of mammalian PTPLA; involved in sphingolipid biosynthesis; required for cell viability Sc
Protein Similarities
Method ID Description E-Value
blast AAB69975 Hypothetical protein T15B7.2 [Caenorhabditis elegans] ref|NP_504740.2| T15B7.2 [Caenorhabditis elegans] 1.0E-109
blast CAE71961 Hypothetical protein CBG19031 [Caenorhabditis briggsae] 1.0E-104
Protein Domains
Database ID Description E-Value
Pfam IPR007482 EMBL-EBI Protein tyrosine phosphatase-like protein, PTPLA 2.2E-94
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504740.2 4 7-29,95-117,130-152,178-200
T15B7.2.1 4 7-29,95-117,130-152,178-200
T15B7.2.2 4 7-29,95-117,130-152,178-200
SNAP00000035392 4 7-29,95-117,130-152,178-200
GENEFINDER00000035399 4 7-29,95-117,130-152,178-200
Sequence
Target Sequence 
>C. ELEGANS:182854_AT
aatgcaagtaacatctcgcgtcgtccttgtctggccaatcctccacttgtgctcaacagc
tcgcttcagtatcggagttccacttcttcttgttgcctggtccgtaacagaggtcatccg
gtactcgttctatgcactcagcgtattgaaacaaccaatcccatatttccttctctacct
cagatacaccctcttctacgttctctacccaatgggagtctccggagagcttctgacgtt
gttcgcttcattaaatgaagttgatgagaagaaaatccttaccctcgagatgccaaaccg
tctcaacatgggaatctccttctggtgggtgctcatcattgctgctctcagctacattcc
cggattcccacaactttacttctacatgatcggtcaaagaaagaagattctcggcggagg
aagcaagaagaagcaattaattgcaaccaatcaaaattcaactttattcataaattattc
tcccaaaacaaaacgacaatggaaatgcttttctgcagaatttgtcgacattttgtgcag
tccatttggtattttcgtcatcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGCAAGTAACATCTCGCGTCGTC 504 165 231 Antisense
GCTCGCTTCAGTATCGGAGTTCCAC 331 299 289 Antisense
TTCTTGTTGCCTGGTCCGTAACAGA 225 689 317 Antisense
AACAGAGGTCATCCGGTACTCGTTC 59 133 336 Antisense
ACTCGTTCTATGCACTCAGCGTATT 262 99 353 Antisense
TCTACGTTCTCTACCCAATGGGAGT 509 613 425 Antisense
CTTCTGACGTTGTTCGCTTCATTAA 259 221 460 Antisense
AACCGTCTCAACATGGGAATCTCCT 262 145 526 Antisense
TCATTGCTGCTCTCAGCTACATTCC 452 619 566 Antisense
ATTCCCACAACTTTACTTCTACATG 319 9 594 Antisense
GTCCATTTGGTATTTTCGTCATCGT 123 477 770 Antisense
Sequence Source Affymetrix Proprietary Database