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[182853_at]

Description B0238.4 /REP_DB=WormBase Gene ID /WP=CE07694 /TR=O16493 /GB=AAB65985.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 45      4grp_total > 06      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 32.9
(-0.4)
A 		9.2
(-3)
A 		16.2
(-2.2)
A 		64.6
(3)
A 		55
B 47.9
(1.3)
A 		13.8
(-3)
A 		61.8
(3)
A 		51
(1.7)
A 		48
C 30.5
(-1.4)
A 		15.1
(-2.6)
A 		10.4
(-3)
A 		85.9
(3)
P 		76
avr 37.1
(-0.3) 		12.7
(-3) 		29.5
(-1.2) 		67.2
(3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 65.1
(3)
A 		6.6
(-2.7)
A 		39.6
(0.5)
P 		3.6
(-3)
A 		16
(-1.8)
A 		6.7
(-2.7)
A 		62
B 11.5
(-1)
A 		8.4
(-1.9)
A 		26
(3)
A 		4.5
(-3)
A 		18.3
(0.9)
A 		14.3
(-0.3)
A 		22
C 6.3
(-2.7)
A 		21.2
(0.1)
A 		6.4
(-2.7)
A 		18.7
(-0.3)
A 		4.9
(-3)
A 		36.1
(3)
A 		31
avr 27.6
(3) 		12.1
(-2) 		24
(1.8) 		8.9
(-3) 		13.1
(-1.7) 		19
(0.2) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 12
(3)
A 		2
(-3)
A 		4.2
(-1.7)
A 		9.5
(1.5)
A 		10
B 15.3
(3)
A 		3.4
(-3)
A 		14.3
(2.5)
A 		10.9
(0.8)
A 		12
C 10.1
(0.6)
A 		4.4
(-2.6)
A 		3.6
(-3)
A 		14.5
(3)
P 		11
avr 12.5
(3) 		3.3
(-3) 		7.4
(-0.3) 		11.6
(2.4) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 12
(3)
A 		2.4
(-2.2)
A 		8.6
(1.2)
P 		0.9
(-3)
A 		4.8
(-0.9)
A 		1.6
(-2.6)
A 		11
B 4
(-0.3)
A 		2.8
(-1.5)
A 		6.3
(1.9)
A 		1.2
(-3)
A 		7.4
(3)
A 		5.3
(1)
A 		6
C 2.3
(-2.6)
A 		6.5
(-0.2)
A 		1.6
(-3)
A 		3.8
(-1.7)
A 		1.6
(-3)
A 		12.1
(3)
A 		11
avr 6.1
(2.7) 		3.9
(-0.3) 		5.5
(1.9) 		2
(-3) 		4.6
(0.6) 		6.3
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182853_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11771
Sequence Type Exemplar sequence
Representative Public ID B0238.4 NCBI
Target Description B0238.4 /REP_DB=WormBase Gene ID /WP=CE07694 /TR=O16493 /GB=AAB65985.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000038881 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5250056:5255010:-1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5253729-5255721(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65984 Serpentine receptor, class t protein 68 [Caenorhabditis elegans] ref|NP_504403.2| Serpentine Receptor, class T family member (srt-68) [Caenorhabditis elegans] 1.0E-145
blast E89045 protein B0238.4 [imported] - Caenorhabditis elegans 1.0E-132
blast AAB65982 Serpentine receptor, class t protein 67 [Caenorhabditis elegans] ref|NP_504405.1| Serpentine Receptor, class T family member (srt-67) [Caenorhabditis elegans] 4.0E-84
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 8.2E-34
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 5.0E-32
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000038881 13 18-40,53-75,90-112,132-154,183-205,222-244,307-329,342-364,379-401,422-444,464-486,511-533,548-570
Sequence
Target Sequence 
>C. ELEGANS:182853_AT
ctggtcattttatcagttctccaattttggtgtttccaaagattttaaagagatatgaag
tgattgtcagggtaagtatcgaaaaagtatgccgcgtcctaatatttaccaatacaattc
aaacttcgaaattcccaatctttgtcaaaatatccataatctgtatattatcatgggttt
tttatgtgttcctatacggatgtataactcaaaatttgatgtttgctcctcccggctggg
gttacgactttgatgtccctcatgctgccaccttcgatcatttggaaatcggattatctt
ttccgagtttggcaatttcttatctttcatatcttgccatagcctacattatatgcgtca
agaaaaccggaactagtaatgcccaatctcgaagaaatgagatccgcattttggtgcagt
caacatttgtaacagtctatattacattgctgatttgtgtgtggcattcaattttgattc
ctgaaaatttgattgacatggcaagtgtcagaaatcaagcaactttgaatttgttctgga
tttcacactgctacatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGGTCATTTTATCAGTTCTCCAAT 29 241 437 Antisense
TATGCCGCGTCCTAATATTTACCAA 328 657 524 Antisense
CAAAATTTGATGTTTGCTCCTCCCG 90 191 646 Antisense
TTACGACTTTGATGTCCCTCATGCT 343 681 678 Antisense
TGCTGCCACCTTCGATCATTTGGAA 342 581 699 Antisense
GATTATCTTTTCCGAGTTTGGCAAT 608 427 728 Antisense
GTTTGGCAATTTCTTATCTTTCATA 491 449 743 Antisense
TCTTTCATATCTTGCCATAGCCTAC 562 615 759 Antisense
GGAACTAGTAATGCCCAATCTCGAA 681 527 805 Antisense
GAGATCCGCATTTTGGTGCAGTCAA 211 395 835 Antisense
GTTCTGGATTTCACACTGCTACATT 246 443 969 Antisense
Sequence Source Affymetrix Proprietary Database