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[182851_s_at]

Description C36C9.4 /REP_DB=WormBase Gene ID /WP=CE19723 /TR=Q9TZK7 /GB=AAC67426.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 33      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 6
(-3)
A 		20.8
(0.7)
A 		20.7
(0.7)
A 		29.8
(3)
A 		24
B 17.1
(-3)
A 		27.5
(0.6)
A 		30.5
(1.7)
A 		34.3
(3)
A 		17
C 8.9
(-3)
A 		25.5
(3)
A 		23
(2.1)
A 		24
(2.5)
A 		17
avr 10.7
(-3) 		24.6
(1.5) 		24.7
(1.5) 		29.4
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 2.3
(-2.9)
A 		23.1
(2.8)
A 		23.7
(3)
A 		8.6
(-1.1)
A 		1.8
(-3)
A 		13.1
(0.1)
A 		22
B 13.1
(0.9)
A 		2.7
(-3)
A 		3.1
(-2.8)
A 		18.6
(3)
A 		7
(-1.4)
A 		2.9
(-2.9)
A 		16
C 10.6
(-1.1)
A 		31.2
(3)
A 		28.9
(2.5)
A 		4.2
(-2.3)
A 		0.9
(-3)
A 		13.1
(-0.6)
A 		30
avr 8.7
(-0.9) 		19
(3) 		18.6
(2.8) 		10.5
(-0.2) 		3.2
(-3) 		9.7
(-0.5) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 2.2
(-3)
A 		4.5
(1.3)
A 		5.4
(3)
A 		4.4
(1.1)
A 		3
B 5.5
(-3)
A 		6.8
(1.3)
A 		7.1
(2.3)
A 		7.3
(3)
A 		2
C 3
(-3)
A 		7.3
(2.2)
A 		8
(3)
A 		4
(-1.8)
A 		5
avr 3.6
(-3) 		6.2
(1.9) 		6.8
(3) 		5.2
(0) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.4
(-3)
A 		8.2
(3)
A 		5.2
(0.7)
A 		2.2
(-1.6)
A 		0.5
(-2.9)
A 		3.2
(-0.8)
A 		8
B 4.6
(2.6)
A 		0.9
(-2.9)
A 		0.8
(-3)
A 		4.9
(3)
A 		2.8
(-0.1)
A 		1.1
(-2.6)
A 		4
C 3.9
(-0.7)
A 		9.5
(3)
A 		7.3
(1.6)
A 		0.9
(-2.6)
A 		0.3
(-3)
A 		4.4
(-0.3)
A 		9
avr 3
(-0.8) 		6.2
(3) 		4.4
(0.8) 		2.7
(-1.2) 		1.2
(-3) 		2.9
(-1) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182851_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18305
Sequence Type Exemplar sequence
Representative Public ID C36C9.4 NCBI
Target Description C36C9.4 /REP_DB=WormBase Gene ID /WP=CE19723 /TR=Q9TZK7 /GB=AAC67426.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075910(11), NM_078278(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075910 NCBI Caenorhabditis elegans C36C9.4 (C36C9.4) mRNA, complete cds. 11/11 A 
NM_078278 NCBI Caenorhabditis elegans T25D1.1 (T25D1.1) mRNA, complete cds. 11/11 A 
SNAP00000025926 ENSEMBL cdna:SNAP chromosome:CEL140:X:16515478:16519088:1 9/11 None
GENEFINDER00000025929 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16515478:16519345:1 9/11 None
SNAP00000005674 ENSEMBL cdna:SNAP chromosome:CEL140:X:1692966:1696974:-1 9/11 None
GENEFINDER00000005678 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1693689:1696974:-1 9/11 None
C36C9.4 ENSEMBL cdna:known chromosome:CEL140:X:1692133:1696974:-1 gene:C36C9.4 11/11 A 
T25D1.1 ENSEMBL cdna:known chromosome:CEL140:X:16518050:16522208:1 gene:T25D1.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1692132-1696974(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl C36C9.4
T25D1.1
Entrez Gene 183274 Entrez gene
188889 Entrez gene
SwissProt Q9TZK7 EMBL-EBI
Q22779 EMBL-EBI
WormBase CE19723 Wormbase
CE05017 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508311 C36C9.4 [Caenorhabditis elegans] gb|AAC67426.1| Hypothetical protein C36C9.4 [Caenorhabditis elegans] 0.0
blast AAA82465 Hypothetical protein T25D1.2 [Caenorhabditis elegans] ref|NP_510678.1| T25D1.2 [Caenorhabditis elegans] 0.0
blast AAA82466 Hypothetical protein T25D1.1 [Caenorhabditis elegans] ref|NP_510679.1| T25D1.1 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR009667 EMBL-EBI Protein of unknown function DUF1258 1.0E-126
Pfam IPR009667 EMBL-EBI Protein of unknown function DUF1258 1.0E-126
Pfam IPR009667 EMBL-EBI Protein of unknown function DUF1258 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510679.1 1 145-167
T25D1.1 1 145-167
Sequence
Target Sequence 
>C. ELEGANS:182851_S_AT
gctaacgtagagtatctttccatcaaagctcatgaagtactttttcatctgccagaaatt
aatgagttgttcggtaatactggatcactctcaacattttcattcgaaagcttttatcaa
tttgctctttgtggatacagtagccgtacgacacgcagttttgttcagaacgcgtcgact
aaaaaaaaatggtggtgccagccacacaagccgccgcaggaagaccaaatgatacctccg
ggaaaaaattttgataagaaagtagaggagcagagaaacaaaaacaatgaaaaagtgggt
cacgggtgccccaggcacttccaacaggcgacagagctcaacgaaattgagctcgttgtc
ttcatccgcgtcagcttcgtagagcatctctaccaattccttgaccaggtgcttgaaaaa
ggcgcaaacaagagtgaagaggcgggaaaatggatgcaaatggagctcaaaaaggaaaat
tgcggagaactagtgaggttgcctggtgtcctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTAACGTAGAGTATCTTTCCATCA 394 301 1429 Antisense
GTATCTTTCCATCAAAGCTCATGAA 156 455 1440 Antisense
GAAGTACTTTTTCATCTGCCAGAAA 301 335 1462 Antisense
GAGTTGTTCGGTAATACTGGATCAC 670 395 1492 Antisense
GGTAATACTGGATCACTCTCAACAT 77 505 1501 Antisense
ACTCTCAACATTTTCATTCGAAAGC 312 99 1515 Antisense
GCTTTTATCAATTTGCTCTTTGTGG 309 305 1538 Antisense
TCTTTGTGGATACAGTAGCCGTACG 479 615 1554 Antisense
GCAGTTTTGTTCAGAACGCGTCGAC 490 289 1583 Antisense
GCGGAGAACTAGTGAGGTTGCCTGG 284 291 1910 Antisense
ACTAGTGAGGTTGCCTGGTGTCCTT 152 101 1917 Antisense
Sequence Source Affymetrix Proprietary Database