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[182850_at]

Description C36C9.4 /REP_DB=WormBase Gene ID /WP=CE19723 /TR=Q9TZK7 /GB=AAC67426.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 10      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 2
(-3)
A 		4.3
(-1.1)
A 		5.6
(0)
A 		9.1
(3)
A 		7
B 1.9
(-3)
A 		11.3
(3)
A 		3.1
(-2.2)
A 		4
(-1.7)
A 		9
C 4.4
(-3)
A 		6.2
(-2.9)
A 		3.9
(-3)
A 		104.7
(3)
A 		101
avr 2.8
(-3) 		7.3
(-2.3) 		4.2
(-2.8) 		39.3
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 3.9
(-0.9)
A 		8.2
(3)
A 		4.4
(-0.4)
A 		4.6
(-0.2)
A 		6
(1)
A 		1.5
(-3)
A 		7
B 4.6
(1.7)
A 		3.2
(-0.4)
A 		1.4
(-3)
A 		5.5
(3)
A 		2.4
(-1.5)
A 		3.3
(-0.2)
A 		4
C 4.9
(0.9)
A 		6.9
(3)
A 		2.7
(-1.3)
A 		3.7
(-0.3)
A 		3.6
(-0.4)
A 		1.1
(-3)
A 		6
avr 4.5
(0.7) 		6.1
(3) 		2.8
(-1.8) 		4.6
(0.8) 		4
(-0.1) 		2
(-3) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 0.7
(-3)
A 		0.9
(-1.5)
A 		1.5
(3)
A 		1.3
(1.5)
A 		1
B 0.6
(-3)
A 		2.8
(3)
A 		0.7
(-2.7)
A 		0.9
(-2.2)
A 		2
C 1.4
(-3)
A 		1.8
(-2.8)
A 		1.3
(-3)
A 		17.7
(3)
A 		16
avr 0.9
(-3) 		1.8
(-2.1) 		1.2
(-2.7) 		6.6
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 0.7
(-2.3)
A 		2.9
(3)
A 		1
(-1.6)
A 		1.2
(-1.1)
A 		1.8
(0.4)
A 		0.4
(-3)
A 		3
B 1.6
(3)
A 		1.1
(0.7)
A 		0.3
(-3)
A 		1.5
(2.5)
A 		1
(0.2)
A 		1.2
(1.2)
A 		1
C 1.8
(1.9)
A 		2.1
(3)
A 		0.7
(-1.9)
A 		0.7
(-1.9)
A 		1.2
(-0.2)
A 		0.4
(-3)
A 		2
avr 1.4
(0.2) 		2
(3) 		0.7
(-3) 		1.1
(-1.2) 		1.3
(-0.2) 		0.7
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182850_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18305
Sequence Type Exemplar sequence
Representative Public ID C36C9.4 NCBI
Target Description C36C9.4 /REP_DB=WormBase Gene ID /WP=CE19723 /TR=Q9TZK7 /GB=AAC67426.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075910(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075910 NCBI Caenorhabditis elegans C36C9.4 (C36C9.4) mRNA, complete cds. 11/11 A 
C36C9.4 ENSEMBL cdna:known chromosome:CEL140:X:1692133:1696974:-1 gene:C36C9.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000005674 7/11 Cross Hyb Matching Probes None
GENEFINDER00000005678 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1692132-1696974(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C36C9.4
Entrez Gene 183274 Entrez gene
SwissProt Q9TZK7 EMBL-EBI
WormBase CE19723 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508311 C36C9.4 [Caenorhabditis elegans] gb|AAC67426.1| Hypothetical protein C36C9.4 [Caenorhabditis elegans] 0.0
blast AAA82465 Hypothetical protein T25D1.2 [Caenorhabditis elegans] ref|NP_510678.1| T25D1.2 [Caenorhabditis elegans] 0.0
blast CAE70402 Hypothetical protein CBG16972 [Caenorhabditis briggsae] 1.0E-129
Protein Domains
Database ID Description E-Value
Pfam IPR009667 EMBL-EBI Protein of unknown function DUF1258 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:182850_AT
tgcagcatggtttctatccgaagctaacgtagagtatctttccatcaaagctcatgaagt
actttttcatctgccagaaattaatgagttgttcggtaatactggatcactctcaacatt
ttcattcgaaagcttttatcaatttgctctttgtggatacagtagccgtacgacacgcag
ttttgttcagaacgcgtcgactaaaaaaaaatggtggtgccagccacacaagccgccgca
ggaagaccaaatgatacctccgggaaaaaattttgataagaaagtagaggagcagagaaa
caaaaacaatgaaaaagtgggtcacgggtgccccaggcacttccaacaggcgacagagct
caacgaaattgagctcgttgtcttcatccgcgtcagcttcgtagagcatctctaccaatt
ccttgaccaggtgcttgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCAGCATGGTTTCTATCCGAAGCT 83 577 1407 Antisense
GGTTTCTATCCGAAGCTAACGTAGA 159 503 1415 Antisense
AAATGGTGGTGCCAGCCACACAAGC 416 117 1615 Antisense
CAAGCCGCCGCAGGAAGACCAAATG 599 185 1635 Antisense
GAAGACCAAATGATACCTCCGGGAA 613 325 1648 Antisense
GCACTTCCAACAGGCGACAGAGCTC 506 315 1743 Antisense
CAGGCGACAGAGCTCAACGAAATTG 442 209 1753 Antisense
GAAATTGAGCTCGTTGTCTTCATCC 457 363 1771 Antisense
CGTCAGCTTCGTAGAGCATCTCTAC 555 245 1797 Antisense
ATCTCTACCAATTCCTTGACCAGGT 366 33 1814 Antisense
CCAATTCCTTGACCAGGTGCTTGAA 180 275 1821 Antisense
Sequence Source Affymetrix Proprietary Database