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[182849_at]

Description Y37A1B.5 /REP_DB=WormBase Gene ID /WP=CE19075 /TR=Q9XXF9 /GB=CAA19490.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 48      6grp_high1_10_10 > 73      4grp_highest_8_8 > 14      4grp_high_8_8 > 14      6grp_highest_nonorm > 54      6grp_total > 74      4grp_total > 09      6grp_high1_sub > 03_04      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1854
1 2 3 4 range
A 1091.6
(-3)
P 		1179.2
(-2.7)
P 		1492.1
(-1.6)
P 		2812.5
(3)
P 		1721
B 1042.3
(-3)
P 		1530.9
(-1.4)
P 		1291.9
(-2.2)
P 		2896.5
(3)
P 		1854
C 1287.7
(-2.9)
P 		1273.1
(-3)
P 		1521.6
(-2.1)
P 		2845
(3)
P 		1572
avr 1140.5
(-3) 		1327.7
(-2.3) 		1435.2
(-2) 		2851.3
(3) 		1711

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1198
1 2 3 4 5 6 range
A 715
(-3)
P 		1070.5
(-0.7)
P 		1628.2
(3)
P 		1446.5
(1.8)
P 		1283.5
(0.7)
P 		1215.1
(0.3)
P 		913
B 728.5
(-3)
P 		1267.9
(0.1)
P 		1757.5
(3)
P 		1702.2
(2.7)
P 		1321.5
(0.5)
P 		1449.4
(1.2)
P 		1029
C 649.2
(-3)
P 		1279.8
(0.2)
P 		1439.4
(1)
P 		1769.8
(2.6)
P 		1173.4
(-0.4)
P 		1846.9
(3)
P 		1198
avr 697.6
(-3) 		1206.1
(0.2) 		1608.4
(2.8) 		1639.5
(3) 		1259.5
(0.6) 		1503.8
(2.1) 		942
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 361
1 2 3 4 range
A 397.5
(2.5)
P 		256
(-3)
P 		390.1
(2.2)
P 		411.7
(3)
P 		156
B 332.4
(-2.4)
P 		378.1
(-1.5)
P 		299.4
(-3)
P 		617.2
(3)
P 		318
C 426.3
(-0.8)
P 		366
(-3)
P 		530.3
(3)
P 		479.7
(1.2)
P 		164
avr 385.4
(-1.2) 		333.4
(-3) 		406.6
(-0.4) 		502.9
(3) 		170

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 487
1 2 3 4 5 6 range
A 131.8
(-3)
P 		380.7
(2.8)
P 		354.6
(2.2)
P 		366.9
(2.5)
P 		387.3
(3)
P 		295.8
(0.9)
P 		256
B 253.5
(-3)
P 		422
(0.5)
P 		426.8
(0.6)
P 		450.8
(1.1)
P 		536.9
(2.9)
P 		540.5
(3)
P 		287
C 240.6
(-3)
P 		390.5
(-0.6)
P 		366.3
(-1)
P 		355.9
(-1.2)
P 		379.7
(-0.8)
P 		618.3
(3)
P 		378
avr 208.6
(-3) 		397.7
(1.1) 		382.6
(0.8) 		391.2
(1) 		434.6
(1.9) 		484.9
(3) 		276
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182849_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9028
Sequence Type Exemplar sequence
Representative Public ID Y37A1B.5 NCBI
Target Description Y37A1B.5 /REP_DB=WormBase Gene ID /WP=CE19075 /TR=Q9XXF9 /GB=CAA19490.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070290(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070290 NCBI Caenorhabditis elegans Y37A1B.5 (Y37A1B.5) mRNA, complete cds. 11/11 None
SNAP00000004225 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14051191:14056594:1 11/11 None
GENEFINDER00000004236 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14051191:14056594:1 11/11 None
Y37A1B.5 ENSEMBL cdna:known chromosome:CEL140:IV:14051169:14056629:1 gene:Y37A1B.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14051196-14056600(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y37A1B.5
Entrez Gene 178360 Entrez gene
SwissProt Q9XXF9 EMBL-EBI
WormBase CE19075 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:17006_AT selenium-binding protein, putative at
ATH1-121501:245285_S_AT selenium-binding protein, putative at
CANINE:1593721_S_AT similar to selenium binding protein 1 cfa
CANINE:1592149_AT similar to selenium binding protein 1 cfa
CANINE_2:CFA.14009.1.S1_S_AT similar to selenium binding protein 1 cfa
CANINE_2:CFAAFFX.19652.1.S1_S_AT similar to selenium binding protein 1 cfa
DROSOPHILA_2:1632517_AT dm
DROSGENOME1:152571_AT dm
CHICKEN:GGA.6250.1.S1_AT selenium binding protein 1 gga
HG-U133_PLUS_2:214433_S_AT selenium binding protein 1 hs
PLASMODIUM_ANOPHELES:214433_S_AT selenium binding protein 1 hs
HG-U133A_2:214433_S_AT selenium binding protein 1 hs
HG-FOCUS:214433_S_AT selenium binding protein 1 hs
HG-U133A:214433_S_AT selenium binding protein 1 hs
HU35KSUBA:RC_AA290679_AT selenium binding protein 1 hs
HUGENEFL:U29091_AT selenium binding protein 1 hs
U133_X3P:HS.288973.1.S1_3P_A_AT selenium binding protein 1 hs
HG-U95AV2:37405_AT selenium binding protein 1 hs
U133_X3P:HS.288973.2.A1_3P_AT Selenium binding protein 1 hs
HG-U133_PLUS_2:233267_AT Selenium binding protein 1 hs
HG-U133B:233267_AT Selenium binding protein 1 hs
MU11KSUBA:M32032_S_AT selenium binding protein 1 mm
MU11KSUBB:MSA.4511.0_F_AT selenium binding protein 1 mm
MG-U74AV2:100596_AT selenium binding protein 1 mm
MG-U74AV2:162030_R_AT selenium binding protein 1 mm
MG-U74CV2:170910_R_AT selenium binding protein 1 mm
MOE430A:1450699_AT selenium binding protein 1 mm
MOUSE430A_2:1450699_AT selenium binding protein 1 mm
MOUSE430_2:1450699_AT selenium binding protein 1 mm
MOE430A:1417580_S_AT selenium binding protein 1 mm
MOUSE430A_2:1417580_S_AT selenium binding protein 1 mm
MOUSE430_2:1417580_S_AT selenium binding protein 1 mm
MG-U74AV2:162030_R_AT selenium binding protein 2 mm
MG-U74CV2:170910_R_AT selenium binding protein 2 mm
MG-U74BV2:108246_AT Selenium binding protein 1, mRNA (cDNA clone MGC:18519 IMAGE:4209393) mm
MOUSE430_2:1444495_AT Selenium binding protein 1, mRNA (cDNA clone MGC:18519 IMAGE:4209393) mm
MOE430B:1444495_AT Selenium binding protein 1, mRNA (cDNA clone MGC:18519 IMAGE:4209393) mm
MU19KSUBB:TC28079_AT Selenium binding protein 1, mRNA (cDNA clone MGC:18519 IMAGE:4209393) mm
MU19KSUBC:TC39094_I_AT Selenium binding protein 1, mRNA (cDNA clone MGC:18519 IMAGE:4209393) mm
RG-U34C:RC_AI105167_AT selenium binding protein 2 rn
RAE230A:1367673_AT selenium binding protein 2 rn
RAT230_2:1367673_AT selenium binding protein 2 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
8430 selenium binding inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA19490 Hypothetical protein Y37A1B.5 [Caenorhabditis elegans] ref|NP_502691.1| Y37A1B.5 [Caenorhabditis elegans] 0.0
blast CAE71767 Hypothetical protein CBG18761 [Caenorhabditis briggsae] 0.0
blast XP_707846 PREDICTED: similar to Selenium binding protein 1 isoform 4 [Danio rerio] 1.0E-148
Protein Domains
Database ID Description E-Value
Pfam IPR008826 EMBL-EBI 56kDa selenium binding 1.0E-126
Pfam IPR008826 EMBL-EBI 56kDa selenium binding 1.0E-126
Pfam IPR008826 EMBL-EBI 56kDa selenium binding 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:182849_AT
acgcttttgtgggatgtgctcttggatcaggaatttttagaattcatcctgttgaggaga
actcaacaacccatgcagctactctcgttgccttcattccttctaaaaaagtaagtggat
gggctcttccagaaatgccagctcttataactgatatccttatctcaatggatgatcgtt
tcctgtatgtctcgtgttggcttcatggagatattcgtcaatatgacatttctgatccat
tgaaggtgaaattgaattctcaagtttatattggaggaagtgtacatacggaatcaaatg
taaaagttctagaaggtgaaaaaccaattgaagcactttatgtgaagggacggaaaattg
aaggaggtccacagatgttacagttgtcattggatggaaagagactttatgttacaactt
ctttatacaagaaatgggatgatcaattctatccagaacatgtcaaatctggcgccacaa
tggttcaagtcaacattgatccagaatctggaaaaatggaaataaatcgagactttttga
tcgattttggaaaaattgaaggaggtccctatttggctcacgagatgcgttatcccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGCTTTTGTGGGATGTGCTCTTGG 688 89 800 Antisense
ATGTGCTCTTGGATCAGGAATTTTT 552 49 813 Antisense
GAGGAGAACTCAACAACCCATGCAG 672 403 853 Antisense
GTTGCCTTCATTCCTTCTAAAAAAG 648 439 886 Antisense
GTAAGTGGATGGGCTCTTCCAGAAA 137 463 910 Antisense
TTCCTGTATGTCTCGTGTTGGCTTC 526 699 979 Antisense
AGAACATGTCAAATCTGGCGCCACA 328 73 1254 Antisense
AAATCTGGCGCCACAATGGTTCAAG 23 119 1264 Antisense
AAGTCAACATTGATCCAGAATCTGG 500 155 1286 Antisense
TGAAGGAGGTCCCTATTTGGCTCAC 526 573 1356 Antisense
TTGGCTCACGAGATGCGTTATCCCG 435 709 1372 Antisense
Sequence Source Affymetrix Proprietary Database