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[182848_at]

Description C30B5.1 /REP_DB=WormBase Gene ID /WP=CE02520 /TR=Q18320 /GB=AAK31466.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 63      6grp_cgc > 69      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 73
(3)
A 		9.2
(-3)
A 		11.5
(-2.8)
A 		12.5
(-2.7)
A 		64
B 14.2
(-3)
A 		38.3
(1.1)
A 		44.5
(2.1)
A 		49.6
(3)
A 		35
C 33.5
(-0.8)
A 		12.9
(-3)
A 		68.9
(3)
A 		16.3
(-2.6)
A 		56
avr 40.2
(2.6) 		20.1
(-3) 		41.6
(3) 		26.1
(-1.3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 577
1 2 3 4 5 6 range
A 18
(-3)
A 		13.3
(-3)
A 		33.1
(-2.8)
A 		105.3
(-2)
A 		261.5
(-0.4)
P 		585.5
(3)
P 		572
B 51.7
(-2.4)
A 		8.3
(-3)
A 		27.1
(-2.8)
A 		114.1
(-1.6)
A 		246.2
(0.1)
P 		465.9
(3)
P 		458
C 10.2
(-3)
A 		26.7
(-2.7)
A 		64.2
(-2.2)
A 		126
(-1.2)
A 		367.5
(2.5)
P 		403.1
(3)
P 		393
avr 26.6
(-2.9) 		16.1
(-3) 		41.5
(-2.7) 		115.1
(-1.7) 		291.7
(0.5) 		484.8
(3) 		469
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 26.6
(3)
A 		2
(-3)
A 		3
(-2.7)
A 		1.8
(-3)
A 		25
B 4.5
(-3)
A 		9.5
(1.9)
A 		10.3
(2.7)
A 		10.6
(3)
A 		6
C 11.1
(-0.7)
A 		3.7
(-2.7)
A 		24
(3)
A 		2.8
(-3)
A 		21
avr 14.1
(3) 		5.1
(-3) 		12.4
(1.9) 		5.1
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 171
1 2 3 4 5 6 range
A 3.3
(-3)
A 		4.7
(-2.9)
A 		7.2
(-2.8)
A 		26.7
(-2)
A 		78.9
(0.3)
P 		142.6
(3)
P 		139
B 18
(-2.5)
A 		2.7
(-3)
A 		6.6
(-2.9)
A 		30.2
(-2)
A 		100
(0.4)
P 		173.7
(3)
P 		171
C 3.8
(-3)
A 		8.2
(-2.8)
A 		16.4
(-2.4)
A 		25.3
(-2)
A 		118.9
(2.3)
P 		135
(3)
P 		131
avr 8.4
(-2.9) 		5.2
(-3) 		10.1
(-2.8) 		27.4
(-2.1) 		99.3
(0.9) 		150.4
(3) 		145
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182848_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5525
Sequence Type Exemplar sequence
Representative Public ID C30B5.1 NCBI
Target Description C30B5.1 /REP_DB=WormBase Gene ID /WP=CE02520 /TR=Q18320 /GB=AAK31466.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062839(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062839 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-319) (tag-319) mRNA, complete cds. 11/11 None
SNAP00000017617 ENSEMBL cdna:SNAP chromosome:CEL140:II:6198742:6201358:1 11/11 None
GENEFINDER00000017628 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6198742:6201358:1 11/11 None
C30B5.1 ENSEMBL cdna:known chromosome:CEL140:II:6198681:6201562:1 gene:C30B5.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6198738-6201355(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tag-319
Ensembl C30B5.1
Entrez Gene 174029 Entrez gene
SwissProt Q18320 EMBL-EBI
WormBase CE37325 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31466 Hypothetical protein C30B5.1 [Caenorhabditis elegans] ref|NP_495240.2| Temporarily Assigned Gene name family member (tag-319) [Caenorhabditis elegans] 0.0
blast T15708 hypothetical protein C30B5.1 - Caenorhabditis elegans 0.0
blast CAE59263 Hypothetical protein CBG02591 [Caenorhabditis briggsae] 1.0E-161
Sequence
Target Sequence 
>C. ELEGANS:182848_AT
tgaggacattgtctactccaagcacacttcgaccacctgtgtctccgcttatgaaatcat
tcagttcgatggacagctcaaacttcaagaatccaatcaacgctcatccaccaatgttct
tctcggatccgcatttcctaatcaacaacaatcagttcaacagtccaacaccattctatg
ctctgaatagttatttcccttcattcccaatggattctagccaagtctatcagaatgcta
ctgacgagcatttcacccctagcggagcatccgaagtggtctgcactgagcaaacgccag
gccatcatttcacctacatacatccagactctggggttcgtctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAGGACATTGTCTACTCCAAGCAC 430 555 1373 Antisense
ACCTGTGTCTCCGCTTATGAAATCA 227 89 1407 Antisense
ATCCACCAATGTTCTTCTCGGATCC 606 39 1478 Antisense
GGATCCGCATTTCCTAATCAACAAC 456 513 1497 Antisense
TCAACAGTCCAACACCATTCTATGC 192 631 1529 Antisense
GAATAGTTATTTCCCTTCATTCCCA 144 327 1557 Antisense
ATGCTACTGACGAGCATTTCACCCC 156 43 1607 Antisense
GCGGAGCATCCGAAGTGGTCTGCAC 288 293 1634 Antisense
GAGCAAACGCCAGGCCATCATTTCA 253 391 1660 Antisense
CATCATTTCACCTACATACATCCAG 470 213 1675 Antisense
ACATCCAGACTCTGGGGTTCGTCTC 619 105 1692 Antisense
Sequence Source Affymetrix Proprietary Database