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[182847_at]

Description Y11D7A.2 /REP_DB=WormBase Gene ID /WP=CE19028 /TR=Q9XWR8 /GB=CAA21580.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 29      6grp_total > 43      4grp_total > 20      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 66.7
(-0.6)
P 		54.9
(-2.3)
A 		50.1
(-3)
A 		91.6
(3)
P 		42
B 52.3
(-3)
P 		72.3
(3)
P 		62.6
(0.1)
P 		61.6
(-0.2)
P 		20
C 53.8
(0.8)
P 		53.1
(0.7)
A 		24.4
(-3)
A 		70.5
(3)
P 		46
avr 57.6
(-0.5) 		60.1
(-0) 		45.7
(-3) 		74.6
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 55.1
(-0.4)
A 		49.2
(-2)
A 		62.6
(1.6)
P 		68.1
(3)
P 		62.8
(1.6)
P 		45.2
(-3)
A 		23
B 68.2
(3)
P 		56.3
(1.4)
A 		67.9
(3)
A 		23
(-3)
A 		40
(-0.7)
P 		55
(1.2)
A 		45
C 42.7
(-1)
A 		63.1
(2.3)
P 		67.2
(3)
P 		46.7
(-0.3)
A 		38.4
(-1.7)
A 		30.2
(-3)
A 		37
avr 55.3
(0.2) 		56.2
(0.4) 		65.9
(3) 		45.9
(-2.4) 		47.1
(-2) 		43.5
(-3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 24.3
(3)
P 		11.9
(-3)
A 		13.1
(-2.4)
A 		13.4
(-2.3)
P 		12
B 16.7
(1.5)
P 		17.9
(3)
P 		14.5
(-1.3)
P 		13.1
(-3)
P 		5
C 17.8
(3)
P 		15.3
(1.4)
A 		8.5
(-3)
A 		11.9
(-0.8)
P 		9
avr 19.6
(3) 		15
(-0.6) 		12
(-3) 		12.8
(-2.4) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 10.2
(-3)
A 		17.5
(2)
A 		13.6
(-0.7)
P 		17.3
(1.9)
P 		18.9
(3)
P 		11
(-2.4)
A 		9
B 23.7
(3)
P 		18.8
(1.3)
A 		16.5
(0.5)
A 		6.1
(-3)
A 		16.2
(0.4)
P 		20.5
(1.9)
A 		18
C 15.8
(0.9)
A 		19.2
(3)
P 		17.1
(1.7)
P 		9.4
(-3)
A 		12.4
(-1.2)
A 		10.1
(-2.6)
A 		10
avr 16.6
(1.5) 		18.5
(3) 		15.7
(0.8) 		10.9
(-3) 		15.8
(0.9) 		13.9
(-0.6) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182847_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8658
Sequence Type Exemplar sequence
Representative Public ID Y11D7A.2 NCBI
Target Description Y11D7A.2 /REP_DB=WormBase Gene ID /WP=CE19028 /TR=Q9XWR8 /GB=CAA21580.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069205(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069205 NCBI Caenorhabditis elegans Y11D7A.2 (Y11D7A.2) mRNA, complete cds. 11/11 None
GENEFINDER00000011228 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9228350:9228926:-1 11/11 None
Y11D7A.2 ENSEMBL cdna:known chromosome:CEL140:IV:9228350:9228926:-1 gene:Y11D7A.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000011199 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9228355-9228932(-) 90.72 100.0
Public Domain and Genome References
Gene Title
Ensembl Y11D7A.2
Entrez Gene 189428 Entrez gene
SwissProt Q9XWR8 EMBL-EBI
WormBase CE19028 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21580 Hypothetical protein Y11D7A.2 [Caenorhabditis elegans] ref|NP_501606.1| Y11D7A.2 [Caenorhabditis elegans] 3.0E-78
blast CAA87047 Hypothetical protein ZK1320.9 [Caenorhabditis elegans] ref|NP_496090.1| ZK1320.9 [Caenorhabditis elegans] 7.0E-26
blast CAE57991 Hypothetical protein CBG01054 [Caenorhabditis briggsae] 7.0E-26
Protein Domains
Database ID Description E-Value
Pfam IPR003702 EMBL-EBI Acetyl-CoA hydrolase/transferase 2.9E-8
Sequence
Target Sequence 
>C. ELEGANS:182847_AT
gtattcgcaaatcaaacatcggacatttttggtactataattgcacctggttcagttttt
tgggacaaatgggaaatttcttgcaaaaaaacttgatttcattgatgtttcacttttttt
taaataataatcaagaattttgtgataatttttcaacatttcttccaaaatttcttgcaa
aatttcttgcaaaattttgcaagaatcaagaaacgggaattcttgcaaaaaatgcaagaa
atcaagaaaatgcaagaatcaagaatcaagaaatggccggccttggtccacacggatttg
atggacttggaaaggcgattattgcattaccatcgagaaccaccaagggacaaactaaaa
ttgttccatttttggcacagggttctggagtcgtcacgactcgtgcacatgccatataca
ttgtcaccgagcatggaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATTCGCAAATCAAACATCGGACA 390 451 17 Antisense
AACATCGGACATTTTTGGTACTATA 70 137 31 Antisense
GTACTATAATTGCACCTGGTTCAGT 282 459 48 Antisense
GCACCTGGTTCAGTTTTTTGGGACA 225 315 59 Antisense
TCAAGAAATGGCCGGCCTTGGTCCA 396 629 282 Antisense
TCGAGAACCACCAAGGGACAAACTA 615 599 349 Antisense
TGTTCCATTTTTGGCACAGGGTTCT 452 561 378 Antisense
GAGTCGTCACGACTCGTGCACATGC 555 399 404 Antisense
TCACGACTCGTGCACATGCCATATA 384 625 410 Antisense
GCACATGCCATATACATTGTCACCG 650 315 421 Antisense
ATACATTGTCACCGAGCATGGAATC 140 25 432 Antisense
Sequence Source Affymetrix Proprietary Database