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[182846_s_at]

Description M01H9.3 /REP_DB=WormBase Gene ID /WP=CE12308 /TR=Q94280 /GB=AAB09144.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 96      4grp_highest_8_8 > 23      4grp_high_8_8 > 13      6grp_highest_nonorm > 49      6grp_total > 86      4grp_total > 10      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11309
1 2 3 4 range
A 3978.4
(-2.4)
P 		3801
(-2.6)
P 		3101.1
(-3)
P 		12471.1
(3)
P 		9370
B 4070.5
(-2.7)
P 		4454.1
(-2.5)
P 		3461.2
(-3)
P 		14346.6
(3)
P 		10885
C 3712.3
(-2.6)
P 		4714.4
(-2.1)
P 		3037.6
(-3)
P 		14035.1
(3)
P 		10998
avr 3920.4
(-2.6) 		4323.2
(-2.4) 		3200
(-3) 		13617.6
(3) 		10418

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8158
1 2 3 4 5 6 range
A 2875.2
(-2.9)
P 		2708.7
(-3)
P 		4218.2
(-1.9)
P 		4689.4
(-1.5)
P 		6606.7
(-0.1)
P 		10837.4
(3)
P 		8129
B 2679.7
(-3)
P 		3484.5
(-2.3)
P 		3818.1
(-2.1)
P 		5103
(-1)
P 		6726.9
(0.4)
P 		9876.6
(3)
P 		7197
C 2697
(-3)
P 		3073
(-2.7)
P 		4191.2
(-1.8)
P 		5530
(-0.8)
P 		6587.6
(0)
P 		10439
(3)
P 		7742
avr 2750.6
(-3) 		3088.7
(-2.7) 		4075.8
(-2) 		5107.5
(-1.1) 		6640.4
(0.1) 		10384.3
(3) 		7634
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2255
1 2 3 4 range
A 1448.5
(0.8)
P 		825.1
(-2.9)
P 		810.7
(-3)
P 		1825.5
(3)
P 		1015
B 1298
(-1.7)
P 		1100.1
(-2.2)
P 		802
(-3)
P 		3057.3
(3)
P 		2255
C 1228.9
(-2.2)
P 		1355.4
(-1.6)
P 		1058.7
(-3)
P 		2366.5
(3)
P 		1308
avr 1325.1
(-1.3) 		1093.5
(-2.2) 		890.5
(-3) 		2416.4
(3) 		1526

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3153
1 2 3 4 5 6 range
A 530
(-3)
P 		963.3
(-1.8)
P 		918.6
(-1.9)
P 		1189.4
(-1.1)
P 		1993.6
(1.2)
P 		2638.6
(3)
P 		2109
B 932.4
(-3)
P 		1159.9
(-2.5)
P 		927.1
(-3)
P 		1351.6
(-2.1)
P 		2733.1
(0.9)
P 		3682.9
(3)
P 		2756
C 999.7
(-2.9)
P 		937.7
(-3)
P 		1066.7
(-2.7)
P 		1112.1
(-2.6)
P 		2131.6
(-0.2)
P 		3494.5
(3)
P 		2557
avr 820.7
(-3) 		1020.3
(-2.5) 		970.8
(-2.6) 		1217.7
(-2) 		2286.1
(0.6) 		3272
(3) 		2451
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182846_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11218
Sequence Type Exemplar sequence
Representative Public ID M01H9.3 NCBI
Target Description M01H9.3 /REP_DB=WormBase Gene ID /WP=CE12308 /TR=Q94280 /GB=AAB09144.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068174(11), NM_001028135(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068174 NCBI Caenorhabditis elegans M01H9.3a (M01H9.3) mRNA, complete cds. 11/11 None
NM_001028135 NCBI Caenorhabditis elegans M01H9.3c (M01H9.3) mRNA, complete cds. 11/11 None
SNAP00000037484 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4468911:4469834:-1 10/11 None
GENEFINDER00000037493 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4468911:4469834:-1 10/11 None
M01H9.3a.1 ENSEMBL cdna:known chromosome:CEL140:IV:4468527:4477054:-1 gene:M01H9.3 11/11 None
M01H9.3a.2 ENSEMBL cdna:known chromosome:CEL140:IV:4468539:4477052:-1 gene:M01H9.3 11/11 None
M01H9.3c ENSEMBL cdna:known chromosome:CEL140:IV:4468911:4470734:-1 gene:M01H9.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_068175 8/11 Cross Hyb Matching Probes None
M01H9.3b 8/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177215 3 2 NM_001028135 182846_s_at (11)
NM_068174 173682_at (11), 182846_s_at (11)
NM_068175 173682_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4468916-4469842(-) 95.45 95.45
Public Domain and Genome References
Ensembl M01H9.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK77617 Hypothetical protein M01H9.3a [Caenorhabditis elegans] ref|NP_500575.1| M01H9.3a [Caenorhabditis elegans] 1.0E-119
blast CAE58529 Hypothetical protein CBG01684 [Caenorhabditis briggsae] 1.0E-111
blast AAV34789 Hypothetical protein M01H9.3c [Caenorhabditis elegans] ref|NP_001023306.1| M01H9.3c [Caenorhabditis elegans] 4.0E-89
blast AAK77617 Hypothetical protein M01H9.3a [Caenorhabditis elegans] ref|NP_500575.1| M01H9.3a [Caenorhabditis elegans] 4.0E-89
Sequence
Target Sequence 
>C. ELEGANS:182846_S_AT
gctcgaccctatggattctttgtggatgtccaaggctccacaagtaagtgatcttgtcgt
tcaaccgaatgttaccttcaaagcggtgactggtggttcaccacactcacccagcgccag
cattccgattgctggagctgatgattcaattcgcccagactacgacactgattgcctctg
gaagccgccaactcgttcggcacgcgtccagaaagaaagaaccatttcgatggattccac
cgactcggagatcggcgcacttggtggacgcaagttctcgacgaacgagggcgccagccc
tgcaccgacttctccaattgatgcacaaccacgtgctcgtcgtatgtcaatctccgaaat
gctgttcggatcgtcgccaaagagcttctcatggggaatggaatccaacacaaccaacac
cactactacttccaactctggtggtggtgatattggagaaaggaagatgtctatcactga
tgtaagtggttggaagggaaaacaaatagacccacgcttcaaggacttcatgaagcatca
gagcaagatcatcggtgacgatggcatctcggcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCGACCCTATGGATTCTTTGTGG 195 299 18 Antisense
GTCGTTCAACCGAATGTTACCTTCA 475 467 73 Antisense
GTGACTGGTGGTTCACCACACTCAC 22 483 103 Antisense
TCGCCCAGACTACGACACTGATTGC 460 599 168 Antisense
GGATTCCACCGACTCGGAGATCGGC 348 509 249 Antisense
TTGGTGGACGCAAGTTCTCGACGAA 555 707 278 Antisense
GCACCGACTTCTCCAATTGATGCAC 425 315 319 Antisense
ACGTGCTCGTCGTATGTCAATCTCC 248 95 348 Antisense
TGCTGTTCGGATCGTCGCCAAAGAG 480 581 377 Antisense
CACTACTACTTCCAACTCTGGTGGT 32 193 438 Antisense
CATCGGTGACGATGGCATCTCGGCC 470 211 567 Antisense
Sequence Source Affymetrix Proprietary Database