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[182845_s_at]

Description Y59A8B.9 /REP_DB=WormBase Gene ID /WP=CE26218 /TR=Q9GRZ0 /GB=CAC14409.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 36      4grp_total > 61      6grp_cgc > 25      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 142.3
(3)
A 		90.8
(0.3)
A 		142.9
(3)
A 		29.2
(-3)
A 		114
B 79.6
(1.1)
A 		80.8
(1.2)
A 		110.9
(3)
A 		12.2
(-3)
A 		99
C 145.9
(3)
A 		125
(1.5)
A 		93.9
(-0.8)
A 		64.3
(-3)
A 		82
avr 122.6
(3) 		98.9
(1.4) 		115.9
(2.5) 		35.2
(-3) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 131
1 2 3 4 5 6 range
A 91.2
(-0.2)
A 		114.5
(0.8)
A 		138.4
(1.9)
A 		140.6
(2)
A 		31.3
(-3)
A 		161.9
(3)
A 		131
B 114.5
(3)
A 		109.7
(2.6)
A 		36.1
(-3)
A 		77.4
(0.2)
A 		52.6
(-1.7)
A 		58.2
(-1.3)
A 		78
C 156.1
(3)
P 		101.5
(-1)
A 		106.7
(-0.6)
A 		99.8
(-1.1)
A 		123.4
(0.6)
A 		74.7
(-3)
A 		81
avr 120.6
(3) 		108.6
(1.6) 		93.7
(-0.1) 		105.9
(1.3) 		69.1
(-3) 		98.3
(0.4) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 51.8
(3)
A 		19.7
(-1.1)
A 		37.4
(1.2)
A 		4.3
(-3)
A 		48
B 25.4
(2.9)
A 		19.9
(1.5)
A 		25.7
(3)
A 		2.6
(-3)
A 		23
C 48.3
(3)
A 		35.9
(1)
A 		32.7
(0.5)
A 		10.8
(-3)
A 		38
avr 41.8
(3) 		25.2
(0.2) 		31.9
(1.3) 		5.9
(-3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 16.8
(-1.6)
A 		40.7
(3)
A 		30.1
(1)
A 		35.7
(2)
A 		9.4
(-3)
A 		39.4
(2.8)
A 		31
B 39.9
(3)
A 		36.5
(2.3)
A 		8.8
(-3)
A 		20.5
(-0.7)
A 		21.4
(-0.6)
A 		21.7
(-0.5)
A 		31
C 57.9
(3)
P 		31
(-1.3)
A 		27.2
(-1.9)
A 		20.1
(-3)
A 		39.9
(0.1)
A 		25
(-2.2)
A 		38
avr 38.2
(3) 		36.1
(2.2) 		22
(-3) 		25.4
(-1.7) 		23.6
(-2.4) 		28.7
(-0.5) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182845_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13066
Sequence Type Exemplar sequence
Representative Public ID Y59A8B.9 NCBI
Target Description Y59A8B.9 /REP_DB=WormBase Gene ID /WP=CE26218 /TR=Q9GRZ0 /GB=CAC14409.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075125(11), NM_075127(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075125 NCBI Caenorhabditis elegans microtubule End Binding Protein family member (ebp-1) (ebp-1) mRNA, complete cds. 11/11 None
NM_075127 NCBI Caenorhabditis elegans Y59A8B.9 (Y59A8B.9) mRNA, complete cds. 11/11 None
SNAP00000028701 ENSEMBL cdna:SNAP chromosome:CEL140:V:18035060:18054897:1 11/11 None
GENEFINDER00000028718 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18058543:18063282:1 11/11 None
GENEFINDER00000028721 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18046166:18054897:1 11/11 None
Y59A8B.7 ENSEMBL cdna:known chromosome:CEL140:V:18046145:18054897:1 gene:Y59A8B.7 11/11 None
Y59A8B.9 ENSEMBL cdna:known chromosome:CEL140:V:18058543:18063282:1 gene:Y59A8B.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000028703 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18058542-18063282(+) 100.0 100.0
chrV:18050157-18054897(+) 100.0 100.0
Public Domain and Genome References
Gene Title

Gene Symbol ebp-1
tag-201
Ensembl Y59A8B.7
Y59A8B.9
Entrez Gene 180181 Entrez gene
3565059 Entrez gene
SwissProt Q9GRZ1 EMBL-EBI
Q9GRZ0 EMBL-EBI
WormBase CE26217 Wormbase
CE26218 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:247432_AT microtubule-associated EB1 family protein at
CANINE:1605411_AT similar to Microtubule-associated protein RP/EB family member 1 (APC-binding protein EB1) (End-binding protein 1) (EB1) cfa
CANINE:1587438_AT similar to Microtubule-associated protein RP/EB family member 1 (APC-binding protein EB1) (End-binding protein 1) (EB1) cfa
CANINE_2:CFA.2144.1.S1_A_AT similar to Microtubule-associated protein RP/EB family member 1 (APC-binding protein EB1) (End-binding protein 1) (EB1) cfa
CANINE_2:CFAAFFX.11823.1.S1_S_AT similar to Microtubule-associated protein RP/EB family member 1 (APC-binding protein EB1) (End-binding protein 1) (EB1) cfa
CANINE_2:CFAAFFX.6621.1.S1_AT similar to Microtubule-associated protein RP/EB family member 1 (APC-binding protein EB1) (End-binding protein 1) (EB1) cfa
CHICKEN:GGA.5032.1.S1_S_AT microtubule-associated protein, RP/EB family, member 1 gga
CHICKEN:GGAAFFX.11910.1.S1_S_AT microtubule-associated protein, RP/EB family, member 1 gga
HG-U133_PLUS_2:200713_S_AT microtubule-associated protein, RP/EB family, member 1 hs
HG-U133A:200713_S_AT microtubule-associated protein, RP/EB family, member 1 hs
HG-U133A_2:200713_S_AT microtubule-associated protein, RP/EB family, member 1 hs
HG-FOCUS:200713_S_AT microtubule-associated protein, RP/EB family, member 1 hs
HU35KSUBC:RC_T93807_S_AT microtubule-associated protein, RP/EB family, member 1 hs
HUGENEFL:U24166_AT microtubule-associated protein, RP/EB family, member 1 hs
U133_X3P:G6912493_3P_A_AT microtubule-associated protein, RP/EB family, member 1 hs
U133_X3P:HS.234279.0.S1_3P_A_AT microtubule-associated protein, RP/EB family, member 1 hs
HG-U133A_2:200712_S_AT microtubule-associated protein, RP/EB family, member 1 hs
HG-U133_PLUS_2:200712_S_AT microtubule-associated protein, RP/EB family, member 1 hs
HG-U133A:200712_S_AT microtubule-associated protein, RP/EB family, member 1 hs
HG-U95AV2:33456_AT microtubule-associated protein, RP/EB family, member 1 hs
MOUSE430_2:1422765_AT microtubule-associated protein, RP/EB family, member 1 mm
MOE430A:1422765_AT microtubule-associated protein, RP/EB family, member 1 mm
MOUSE430A_2:1422765_AT microtubule-associated protein, RP/EB family, member 1 mm
MOUSE430_2:1450740_A_AT microtubule-associated protein, RP/EB family, member 1 mm
MOE430A:1450740_A_AT microtubule-associated protein, RP/EB family, member 1 mm
MOUSE430A_2:1450740_A_AT microtubule-associated protein, RP/EB family, member 1 mm
MU11KSUBA:AA434661_AT microtubule-associated protein, RP/EB family, member 1 mm
MU11KSUBA:U51196_S_AT microtubule-associated protein, RP/EB family, member 1 mm
MU11KSUBA:AA672944_RC_S_AT microtubule-associated protein, RP/EB family, member 1 mm
MG-U74AV2:93306_AT microtubule-associated protein, RP/EB family, member 1 mm
MG-U74AV2:99367_AT microtubule-associated protein, RP/EB family, member 1 mm
MG-U74AV2:92350_AT microtubule-associated protein, RP/EB family, member 1 mm
MG-U74BV2:163556_AT microtubule-associated protein, RP/EB family, member 1 mm
MOE430A:1428819_AT microtubule-associated protein, RP/EB family, member 1 mm
MOUSE430A_2:1428819_AT microtubule-associated protein, RP/EB family, member 1 mm
MOUSE430_2:1428819_AT microtubule-associated protein, RP/EB family, member 1 mm
MOE430A:1422764_AT microtubule-associated protein, RP/EB family, member 1 mm
MOUSE430A_2:1422764_AT microtubule-associated protein, RP/EB family, member 1 mm
MOUSE430_2:1422764_AT microtubule-associated protein, RP/EB family, member 1 mm
MOE430A:1428820_AT microtubule-associated protein, RP/EB family, member 1 mm
MOUSE430A_2:1428820_AT microtubule-associated protein, RP/EB family, member 1 mm
MOUSE430_2:1428820_AT microtubule-associated protein, RP/EB family, member 1 mm
MU11KSUBA:AA546954_AT Microtubule-associated protein, RP/EB family, member 1 (Mapre1), mRNA mm
MU19KSUBA:TC14893_S_AT Microtubule-associated protein, RP/EB family, member 1 (Mapre1), mRNA mm
MU19KSUBA:TC20756_AT Microtubule-associated protein, RP/EB family, member 1 (Mapre1), mRNA mm
MU19KSUBA:TC25518_AT Microtubule-associated protein, RP/EB family, member 1 (Mapre1), mRNA mm
MU19KSUBC:TC36905_AT Microtubule-associated protein, RP/EB family, member 1 (Mapre1), mRNA mm
MU19KSUBC:TC39895_AT Microtubule-associated protein, RP/EB family, member 1 (Mapre1), mRNA mm
MU19KSUBC:TC39895_G_AT Microtubule-associated protein, RP/EB family, member 1 (Mapre1), mRNA mm
YEAST_2:1772331_AT Microtubule-binding protein that together with Kar9p makes up the cortical microtubule capture site and delays the exit from mitosis when the spindle is oriented abnormally Sc
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
8017 microtubule binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAC14407 Hypothetical protein Y59A8B.6 [Caenorhabditis elegans] ref|NP_507525.1| Y59A8B.6 [Caenorhabditis elegans] 0.0
blast CAE61660 Hypothetical protein CBG05596 [Caenorhabditis briggsae] 0.0
blast CAC14408 Hypothetical protein Y59A8B.7 [Caenorhabditis elegans] ref|NP_507526.1| microtubule End Binding Protein family member (ebp-1) [Caenorhabditis elegans] 1.0E-133
blast CAE61661 Hypothetical protein CBG05597 [Caenorhabditis briggsae] 1.0E-124
blast BAB84522.1 xEB1A [Xenopus laevis] 6.0E-58
blast CAC14408 Hypothetical protein Y59A8B.7 [Caenorhabditis elegans] ref|NP_507526.1| microtubule End Binding Protein family member (ebp-1) [Caenorhabditis elegans] 1.0E-51
Protein Domains
Database ID Description E-Value
Pfam IPR004953 EMBL-EBI EB1 protein 2.8E-27
Pfam IPR001715 EMBL-EBI Calponin-like actin-binding 1.4E-9
Pfam IPR004953 EMBL-EBI EB1 protein 2.8E-27
Pfam IPR004953 EMBL-EBI EB1 protein 2.8E-27
Pfam IPR001715 EMBL-EBI Calponin-like actin-binding 1.4E-9
Pfam IPR004953 EMBL-EBI EB1 protein 2.8E-27
Pfam IPR004953 EMBL-EBI EB1 protein 2.8E-27
Sequence
Target Sequence 
>C. ELEGANS:182845_S_AT
ttccgactgaagggggtccagctgctggagcttcagcgaagactccgtcgagaatgccgg
ctagaagtgttccgcaaaaaccagtgaccacaatgagaactccagccgccaccccggctg
ctccaccaacccgtccaactccatcccgttcttcagctgctccgagagcaacagctccaa
ctccaacagcagcacctccaaaaacttgtgcaccgcccgttcgttctgcatcaaccgtag
cagcggctgctgctgctgcaccaccgggagtcgatatggcgacatttaataaattaaaag
aagaactggaagaagttacacgtcagctgacagaatctgacaatgttattgcaagtctgg
aaaaagaaagagacttttattttagtaaacttcgaacgattgaagttatttgtcaggata
atgaatcgattggaaatgttgaagttaatcgagttttggaggttctctacgagacggaag
aaggattcgcaccacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCGACTGAAGGGGGTCCAGCTGC 509 699 38 Antisense
GTCCAGCTGCTGGAGCTTCAGCGAA 412 477 53 Antisense
GAAGACTCCGTCGAGAATGCCGGCT 354 339 75 Antisense
GAATGCCGGCTAGAAGTGTTCCGCA 698 329 89 Antisense
TGACCACAATGAGAACTCCAGCCGC 634 569 122 Antisense
GCTCCGAGAGCAACAGCTCCAACTC 232 299 196 Antisense
AACAGCAGCACCTCCAAAAACTTGT 658 135 222 Antisense
TGCATCAACCGTAGCAGCGGCTGCT 430 579 264 Antisense
GCACCACCGGGAGTCGATATGGCGA 262 313 295 Antisense
GAAGAAGTTACACGTCAGCTGACAG 492 339 346 Antisense
GACGGAAGAAGGATTCGCACCACCA 665 375 510 Antisense
Sequence Source Affymetrix Proprietary Database