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[182842_s_at]

Description R02D3.7 /REP_DB=WormBase Gene ID /WP=CE18101 /TR=O44505 /GB=AAB94147.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 86      4grp_high_8_8 > 02      6grp_highest_nonorm > 92      6grp_total > 88      4grp_total > 06      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 210
1 2 3 4 range
A 259.5
(1.4)
P 		109
(-3)
M 		170.1
(-1.2)
P 		316.5
(3)
P 		208
B 268.6
(0.8)
P 		233.4
(-0.8)
P 		183.8
(-3)
P 		318.6
(3)
P 		135
C 277.2
(2.8)
P 		126.4
(-3)
P 		184.6
(-0.8)
P 		283.1
(3)
P 		157
avr 268.4
(1.5) 		156.3
(-3) 		179.5
(-2.1) 		306.1
(3) 		150

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 456
1 2 3 4 5 6 range
A 114.2
(-3)
P 		271.2
(-0.4)
P 		306
(0.1)
P 		325.6
(0.5)
P 		306.2
(0.1)
P 		480.2
(3)
P 		366
B 287.5
(-2)
P 		352.8
(-0.8)
P 		256.6
(-2.5)
P 		229.9
(-3)
P 		400.9
(0)
P 		570
(3)
P 		340
C 261.2
(-3)
P 		289.4
(-2)
P 		272.2
(-2.6)
P 		285.7
(-2.2)
P 		341.1
(-0.3)
P 		437.9
(3)
P 		177
avr 221
(-3) 		304.5
(-1.2) 		278.3
(-1.7) 		280.4
(-1.7) 		349.4
(-0.2) 		496
(3) 		275
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 94.5
(3)
P 		23.7
(-3)
M 		44.5
(-1.2)
P 		46.3
(-1.1)
P 		71
B 85.7
(3)
P 		57.6
(-0.9)
P 		42.6
(-3)
P 		67.9
(0.5)
P 		43
C 91.7
(3)
P 		36.3
(-3)
P 		64.3
(0)
P 		47.7
(-1.8)
P 		55
avr 90.6
(3) 		39.2
(-3) 		50.5
(-1.7) 		54
(-1.3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 192
1 2 3 4 5 6 range
A 21.1
(-3)
P 		96.4
(1.7)
P 		66.6
(-0.2)
P 		82.6
(0.9)
P 		92.4
(1.5)
P 		116.9
(3)
P 		96
B 100.1
(-1.4)
P 		117.4
(-0.8)
P 		62.3
(-2.9)
P 		60.9
(-3)
P 		162.9
(1)
P 		212.6
(3)
P 		152
C 96.8
(-0.4)
P 		88.3
(-0.9)
P 		69.3
(-2.2)
P 		57.5
(-3)
P 		110.4
(0.6)
P 		146.6
(3)
P 		89
avr 72.7
(-2.6) 		100.7
(-0.8) 		66.1
(-3) 		67
(-2.9) 		121.9
(0.6) 		158.7
(3) 		93
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182842_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11210
Sequence Type Exemplar sequence
Representative Public ID R02D3.7 NCBI
Target Description R02D3.7 /REP_DB=WormBase Gene ID /WP=CE18101 /TR=O44505 /GB=AAB94147.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067485(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067485 NCBI Caenorhabditis elegans R02D3.7 (R02D3.7) mRNA, complete cds. 11/11 None
SNAP00000011019 ENSEMBL cdna:SNAP chromosome:CEL140:IV:253695:255426:-1 11/11 None
GENEFINDER00000011027 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:253695:255426:-1 11/11 None
R02D3.7 ENSEMBL cdna:known chromosome:CEL140:IV:253571:255429:-1 gene:R02D3.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:253694-255426(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R02D3.7
Entrez Gene 176844 Entrez gene
SwissProt O44505 EMBL-EBI
WormBase CE18101 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB94147 Hypothetical protein R02D3.7 [Caenorhabditis elegans] ref|NP_499886.1| R02D3.7 [Caenorhabditis elegans] 0.0
blast CAE74727 Hypothetical protein CBG22545 [Caenorhabditis briggsae] 1.0E-142
blast B88633 protein F56B3.9 [imported] - Caenorhabditis elegans 7.0E-15
Sequence
Target Sequence 
>C. ELEGANS:182842_S_AT
ggaagattgaccagacttgtacagcatatttgaaagtcacaacagaagaggacggttcaa
cttgggcaactggatgctttactcatatcggacatgatcttgatcacaaacttctatggc
tcaccgaatctcaggaaaaatatgttcgtgagctaattgacttgggatggacttctgatc
agatcttcttctttattcggaatgagtacaaggactacgagtgtaaattaaaatatatct
caaagaatgatattagaaatatcacagttcggtacaatagagaacgggagaagcttggtt
ttttaacggacactgcaaaatcttctgcgattccgattagtttgaaagagcggcgagccg
ttgctgcagatagtacgaaagaaccgagagaagaagatgatgatgaggttaaggcgaaaa
ttccaaggatgcaaagcaaacctgataacattgaaaaggcaactacttcagaaaataatt
ctgcaaaacatcgcgaacaagttgtggattcagaaactgcggaagaagatgaatatatca
acgtagttgatgtggatacgatgccaccaaacgatgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAGATTGACCAGACTTGTACAGC 289 531 845 Antisense
AGAGGACGGTTCAACTTGGGCAACT 669 55 891 Antisense
GCAACTGGATGCTTTACTCATATCG 706 319 910 Antisense
GATCACAAACTTCTATGGCTCACCG 485 421 946 Antisense
TCTATGGCTCACCGAATCTCAGGAA 310 615 957 Antisense
GATCAGATCTTCTTCTTTATTCGGA 319 421 1021 Antisense
GCTTGGTTTTTTAACGGACACTGCA 29 281 1137 Antisense
GACACTGCAAAATCTTCTGCGATTC 575 367 1153 Antisense
TCTTCTGCGATTCCGATTAGTTTGA 196 617 1165 Antisense
GAAAGAGCGGCGAGCCGTTGCTGCA 129 361 1188 Antisense
GGATACGATGCCACCAAACGATGCT 317 509 1398 Antisense
Sequence Source Affymetrix Proprietary Database