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[182839_at]

Description Y11D7A.3 /REP_DB=WormBase Gene ID /WP=CE19029 /TR=Q9XWR7 /GB=CAA21581.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 74      4grp_total > 16      6grp_rule_based > S3      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 888
1 2 3 4 range
A 86.8
(-3)
A 		295
(-1.6)
P 		514.9
(-0.1)
P 		968.6
(3)
P 		882
B 85.5
(-3)
A 		379.7
(-1)
M 		474.3
(-0.4)
P 		969.4
(3)
P 		884
C 81.8
(-3)
A 		314.1
(-0.9)
P 		502.5
(0.8)
P 		752.9
(3)
P 		671
avr 84.7
(-3) 		329.6
(-1.2) 		497.2
(0) 		897
(3) 		812

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1051
1 2 3 4 5 6 range
A 127.1
(-3)
A 		366.1
(-1.1)
P 		867.6
(3)
P 		674.5
(1.4)
P 		859.7
(2.9)
P 		560.5
(0.5)
P 		741
B 92.7
(-3)
A 		395.7
(-1.2)
P 		1076.7
(3)
P 		790.3
(1.3)
P 		782.1
(1.2)
P 		774.1
(1.2)
P 		984
C 26.2
(-3)
A 		367.4
(-0.4)
P 		802.2
(3)
P 		767.4
(2.7)
P 		646.5
(1.8)
P 		806.1
(3)
P 		780
avr 82
(-3) 		376.4
(-0.9) 		915.5
(3) 		744.1
(1.8) 		762.8
(1.9) 		713.6
(1.5) 		834
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 180
1 2 3 4 range
A 31.6
(-3)
A 		64
(-1.2)
P 		134.6
(2.6)
P 		141.8
(3)
P 		110
B 27.3
(-3)
A 		93.8
(-0.8)
M 		109.9
(-0.2)
P 		206.6
(3)
P 		179
C 27.1
(-3)
A 		90.3
(-0.4)
P 		175.1
(3)
P 		127
(1.1)
P 		148
avr 28.7
(-3) 		82.7
(-0.5) 		139.9
(2.1) 		158.5
(3) 		130

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 308
1 2 3 4 5 6 range
A 23.4
(-3)
A 		130.2
(-0.3)
P 		188.9
(1.2)
P 		171.1
(0.8)
P 		259.4
(3)
P 		136.5
(-0.1)
P 		236
B 32.3
(-3)
A 		131.7
(-0.9)
P 		261.4
(1.8)
P 		209.3
(0.7)
P 		317.8
(3)
P 		288.7
(2.4)
P 		286
C 9.7
(-3)
A 		112.1
(-0.6)
P 		204.2
(1.5)
P 		154.3
(0.3)
P 		209.2
(1.6)
P 		269.8
(3)
P 		260
avr 21.8
(-3) 		124.7
(-0.4) 		218.2
(1.9) 		178.2
(0.9) 		262.1
(3) 		231.7
(2.2) 		240
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182839_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9046
Sequence Type Exemplar sequence
Representative Public ID Y11D7A.3 NCBI
Target Description Y11D7A.3 /REP_DB=WormBase Gene ID /WP=CE19029 /TR=Q9XWR7 /GB=CAA21581.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069207(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069207 NCBI Caenorhabditis elegans Y11D7A.3 (Y11D7A.3) mRNA, complete cds. 11/11 None
SNAP00000011200 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9237225:9241194:1 11/11 None
GENEFINDER00000011232 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9236979:9241194:1 11/11 None
Y11D7A.3 ENSEMBL cdna:known chromosome:CEL140:IV:9236941:9241362:1 gene:Y11D7A.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9236984-9241200(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y11D7A.3
Entrez Gene 177745 Entrez gene
SwissProt Q9XWR7 EMBL-EBI
WormBase CE19029 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21581 Hypothetical protein Y11D7A.3 [Caenorhabditis elegans] ref|NP_501608.1| Y11D7A.3 [Caenorhabditis elegans] 0.0
blast CAE69063 Hypothetical protein CBG15077 [Caenorhabditis briggsae] 0.0
blast CAE74654 Hypothetical protein CBG22453 [Caenorhabditis briggsae] 1.0E-113
Protein Domains
Database ID Description E-Value
Pfam IPR010291 EMBL-EBI Eukaryotic protein of unknown function DUF895 7.7E-95
Pfam IPR010291 EMBL-EBI Eukaryotic protein of unknown function DUF895 1.8E-59
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501608.1 12 32-54,69-91,104-123,128-147,168-190,205-224,259-281,296-318,325-347,371-393,405-424,429-451
Y11D7A.3 12 32-54,69-91,104-123,128-147,168-190,205-224,259-281,296-318,325-347,371-393,405-424,429-451
SNAP00000011200 10 12-34,49-71,78-100,125-147,181-203,218-240,247-269,293-315,327-346,351-373
GENEFINDER00000011232 12 32-54,69-91,104-123,128-147,168-190,205-224,259-281,296-318,325-347,371-393,405-424,429-451
Sequence
Target Sequence 
>C. ELEGANS:182839_AT
cttcttgcgcccattgctcaaaagagccggtgattatggtctctatgtgaccgctggatt
caattttctctcatactcagttgttatcattttggcttttctttcaattccaaatctttc
aacctttggtccaaccagttcaccaccaatatttctcactccaagtcgtcttctcgtctt
catcattggatttttgatcggattctctgatttctgtgtgacaatggctcgtgctgtcat
ttgccaagtcgctgttccagattgtcgtatgcaggtcttctctctgtcaaaactttatca
gagtggttcatcagttgtagttctccttctaactccatatatgactatctacatttggct
ttgtgtgctcacaattttccttttaattggaaccacatgtttcgttattgttgcccgtag
aactgctgccgatcgtcaaaaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTCTTGCGCCCATTGCTCAAAAGA 488 221 951 Antisense
GCCGGTGATTATGGTCTCTATGTGA 523 283 976 Antisense
GCTGGATTCAATTTTCTCTCATACT 209 295 1003 Antisense
ATCTTTCAACCTTTGGTCCAACCAG 25 13 1064 Antisense
AGTTCACCACCAATATTTCTCACTC 59 65 1087 Antisense
GACAATGGCTCGTGCTGTCATTTGC 398 365 1170 Antisense
GCCAAGTCGCTGTTCCAGATTGTCG 259 277 1193 Antisense
AGGTCTTCTCTCTGTCAAAACTTTA 551 57 1223 Antisense
GTTCTCCTTCTAACTCCATATATGA 665 441 1270 Antisense
TGTGTGCTCACAATTTTCCTTTTAA 694 555 1312 Antisense
AGAACTGCTGCCGATCGTCAAAAAC 367 73 1369 Antisense
Sequence Source Affymetrix Proprietary Database